Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F04
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical p...   230   9e-61
AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical...    30   2.0  
Z46812-4|CAN86624.1|  405|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    29   6.2  
AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U80437-17|AAB37628.1|  180|Caenorhabditis elegans Hypothetical
           protein C43E11.9 protein.
          Length = 180

 Score =  230 bits (563), Expect = 9e-61
 Identities = 99/179 (55%), Positives = 137/179 (76%)
 Frame = +3

Query: 135 MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKP 314
           M+ L+E+ T ++F KL  +IG NV +LIDR DG YCFR  K+RVYY SE L+  A  +  
Sbjct: 1   MRPLTEEETSLVFAKLASFIGDNVSMLIDRNDGDYCFRNHKERVYYCSENLMRQAACIAR 60

Query: 315 DNLISAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGR 494
           + L+S GTC GKFTK+ KF L ITAL Y++PYA FKVW+KP+AEQQFLYG++I+KSG+ R
Sbjct: 61  EPLLSFGTCLGKFTKSKKFHLQITALDYLAPYAKFKVWLKPNAEQQFLYGNNILKSGIAR 120

Query: 495 ITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEYIRSEDTL 671
           +T+ TP H G+VV +M+D+P+GFGV+++ T++ + ADP A +V HQ D+GEY+R+E  L
Sbjct: 121 MTDGTPTHAGIVVYSMTDVPLGFGVSAKGTSDSKRADPTALVVLHQCDLGEYLRNESHL 179


>AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical
           protein Y73F8A.24 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 231 GTYCFREKKDRVYYISEKLLHLAQTVKPDNLISAGTCFGKFTKTNKFRLH 380
           G    R++KD V+++++ L HLA     D++ +     GK      FR++
Sbjct: 270 GVIFIRKRKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVETNFRVY 319


>Z46812-4|CAN86624.1|  405|Caenorhabditis elegans Hypothetical
           protein ZK675.3a protein.
          Length = 405

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 374 VAHYSFDLHITLCAVQSVGEAVCGTTVLVWTPHHQKWLGPDNRKYTETSRC 526
           +A Y  D H+    + +  E V   ++LV    HQKW  P N   T   RC
Sbjct: 140 LARYPTDDHLVDSGLMTKEEMVMFKSILVHVDPHQKWWVPLNWIQTMMVRC 190


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 187 LVNFSNNILVRSSDNTFIFNYFIIFS 110
           L+NF +N+ +    N+ IF+YF+ FS
Sbjct: 156 LLNFPHNLFLSLVSNSMIFSYFLEFS 181


>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 276 SEKLLHLAQTVKPDNLISAGTCFGKFTK 359
           ++ LL + +TVKP  LI A T  G FT+
Sbjct: 400 TKNLLEVVKTVKPGALIGASTVAGAFTE 427


>AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical
           protein Y43B11AL.1 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 234 TYCFREKKDRVYYISEKLLHLAQTVKPDNLISAGTCFGKFTKTN 365
           T C   + ++++ +   +LH AQ +   +L+S    FG F K N
Sbjct: 194 TQCETVRIEQIFNLETVILHNAQWITLPDLLSLNCRFGSFRKFN 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,935,152
Number of Sequences: 27780
Number of extensions: 363237
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)