Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F02
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   3.9  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   3.9  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   3.9  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           28   8.9  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -2

Query: 838  PPXXGGXXXXXXXXPPPXKXKXPPPXPPXXXXXPXXGG 725
            PP  GG        PPP     PPP PP     P  GG
Sbjct: 934  PPPPGGSAPSQP--PPPGGNAPPPPPPPGGSAPPPGGG 969


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 840 PPPXGGXXXXXXXXXPPXXKXXXPPPXPP 754
           P P GG         PP  K   PPP PP
Sbjct: 365 PQPLGGPPPPPPGRRPPSGKINPPPPPPP 393


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 840 PPPXGGXXXXXXXXXPPXXKXXXPPPXPP 754
           P P GG         PP  K   PPP PP
Sbjct: 277 PQPLGGPPPPPPGRRPPSGKINPPPPPPP 305


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -2

Query: 838 PPXXGGXXXXXXXXPPPXKXKXPPPXPPXXXXXPXXGG 725
           PP            PPP     PPP PP     P  GG
Sbjct: 292 PPPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGG 329


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = -2

Query: 865 PXXFXFXFSPPXXGGXXXXXXXXPPPXKXKXPPPXPP 755
           P  F     PP  GG        PPP      PP PP
Sbjct: 645 PNPFFGGIPPPPPGGGMFPPPPPPPPGGGVPGPPKPP 681


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 796 PPPXKXKXPPPXPPXXXXXPXXGGXG 719
           PPP     PPP PP     P  G  G
Sbjct: 396 PPPPPTNGPPPPPPPTNGPPSEGKCG 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,791
Number of Sequences: 59808
Number of extensions: 131493
Number of successful extensions: 911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)