Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_F01
(843 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 185 1e-45
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 184 2e-45
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 154 2e-36
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 143 4e-33
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 113 5e-24
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 112 9e-24
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 111 2e-23
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 66 1e-22
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 107 3e-22
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 105 1e-21
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 102 1e-20
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 94 5e-18
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 91 4e-17
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 88 3e-16
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 59 2e-07
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 54 3e-06
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 53 1e-05
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 53 1e-05
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 52 1e-05
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 50 1e-04
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 48 3e-04
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 4e-04
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 47 5e-04
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 46 0.002
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 46 0.002
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 45 0.002
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 45 0.003
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 44 0.006
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 42 0.019
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 40 0.059
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 38 0.42
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 36 0.96
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 36 1.7
UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage Barnyard... 34 3.9
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 34 5.1
UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2; Therm... 34 5.1
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 33 6.8
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 185 bits (451), Expect = 1e-45
Identities = 81/152 (53%), Positives = 106/152 (69%)
Frame = +2
Query: 224 HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
+K+K +++LRKRCNVNPARGPFHFRAPS+ +K VRGMIPHKT+RG+ AL RLR +DG P
Sbjct: 52 NKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIP 111
Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 583
P+D L+ R YC VGRLSHE+GW Y+DV++ LE KRK K +
Sbjct: 112 SPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLK 171
Query: 584 YEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
+ ++LK++T A E ++KA PF II+SYGY
Sbjct: 172 HNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 184 bits (449), Expect = 2e-45
Identities = 80/152 (52%), Positives = 104/152 (68%)
Frame = +2
Query: 224 HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
+K+K +++LRKRCNVNPARGPFHFRAPS+ LWK VRGM+PHKT+RG NAL+RL+ Y+G P
Sbjct: 52 NKIKFLAYLRKRCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLKVYEGIP 111
Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 583
PFD CL+P R +C VGR++HE+GWKYRDVV LE KRK K+
Sbjct: 112 SPFDRQKRLCVPTAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLEAKRKIKSRLSYL 171
Query: 584 YEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
+ KKLK++T A V+ +++ YGY
Sbjct: 172 HSKKLKKLTWKARTAVADKVKDQDAVLRKYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 154 bits (374), Expect = 2e-36
Identities = 71/163 (43%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Frame = +2
Query: 194 KSISLATSLX-HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNA 370
+ I+++ SL +KLK +FL+KR N NP RGPFHFR+P++ LW+T+RGMIPHKT RG A
Sbjct: 38 EEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAA 97
Query: 371 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 550
L RL+ ++G PPP+D LKPGR +C +GRL+ E+GW++ D+V +LE+
Sbjct: 98 LERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEE 157
Query: 551 KRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
KRK K+ A +K L + A V+ T + YG+
Sbjct: 158 KRKTKSAAFYARKKTLVNLRAKAAVAVASKTANIQKELDHYGF 200
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 143 bits (347), Expect = 4e-33
Identities = 64/129 (49%), Positives = 87/129 (67%)
Frame = +2
Query: 227 KLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPP 406
K+K + FLRKR N P+ GP HFRAPSK LW+T+RGMIPHKT+RG AL RL+ Y+G PP
Sbjct: 56 KMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPP 115
Query: 407 PFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY 586
P+D L+ G YC +G+LS E+GW + D +++LEDKRK +A +V Y
Sbjct: 116 PYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELEDKRKERA--QVTY 173
Query: 587 EKKLKRITK 613
E++ K++ K
Sbjct: 174 ERR-KQLAK 181
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 113 bits (272), Expect = 5e-24
Identities = 52/118 (44%), Positives = 68/118 (57%)
Frame = +2
Query: 185 AAHKSISLATSLXHKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGK 364
A H +S S+ K L R N P+ GP HFR+P+K LW+TVRGMIPHKT+RG+
Sbjct: 16 ARHHMLSRLASIIAKELLNGKRVVRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGE 75
Query: 365 NALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 538
AL RL+ Y+ PP+D L+PG YC +G+LS E+GW Y D +R
Sbjct: 76 AALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 133
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 112 bits (270), Expect = 9e-24
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 1/163 (0%)
Frame = +2
Query: 194 KSISLATSLX-HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNA 370
++I+++ SL +++K FL K N NP RG HFRAPS+ W+ VRGM+PHKT +G A
Sbjct: 110 EAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAA 169
Query: 371 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 550
L RL+ ++G P P+D L+ R C +G LS +GW + ++ KLE+
Sbjct: 170 LERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEE 229
Query: 551 KRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
KR+ +A + ++KK+K+ E + A + +GY
Sbjct: 230 KRRARA--KTYHDKKVKQADARKKELAAPALKAIKDKLAQFGY 270
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 111 bits (267), Expect = 2e-23
Identities = 56/151 (37%), Positives = 82/151 (54%)
Frame = +2
Query: 227 KLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPP 406
K + + KR N N RGPFHFRAP++ + +T+RGMIP+KT RG +A+ RLR YDG PP
Sbjct: 48 KAHYLKKMHKRTNFNHLRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLRVYDGIPP 107
Query: 407 PFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY 586
CL+P R C VGR++HEIGW++ V + E +R + K
Sbjct: 108 CCARYKRVVCPSAMAYLCLRPERRRCEVGRVAHEIGWQHAADVERYEKRRLEECDKWYQD 167
Query: 587 EKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
+ ++ + +A EK ++ + YGY
Sbjct: 168 KIQIDKKIAEAAEKDAELQR-INAELAKYGY 197
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 65.7 bits (153), Expect(2) = 1e-22
Identities = 29/72 (40%), Positives = 46/72 (63%)
Frame = +2
Query: 461 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 640
LKP R + ++GRL+H++GWKY+ V LE+ RK KA +K+L R+ K A + V K
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKK 157
Query: 641 TTPFTTIIQSYG 676
T +T ++++G
Sbjct: 158 TDKYTEFLKTHG 169
Score = 64.1 bits (149), Expect(2) = 1e-22
Identities = 25/43 (58%), Positives = 34/43 (79%)
Frame = +2
Query: 224 HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKT 352
+KLK ++FL K+ N NP+RGP+ F+APS+ W T RGM+PHKT
Sbjct: 49 NKLKYLAFLCKQMNTNPSRGPYRFQAPSRIFWWTARGMLPHKT 91
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 107 bits (257), Expect = 3e-22
Identities = 50/145 (34%), Positives = 75/145 (51%)
Frame = +2
Query: 245 FLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 424
+ KR N NP +GP+H+ +PS+ WKTVRGM+PHKT RG A R + Y+G P P+D
Sbjct: 55 YKNKRMNTNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVK 114
Query: 425 XXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKR 604
L G +C +G +IGWK+ +V++LE KR+ A + A +K+
Sbjct: 115 RAVVPEALKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELEAKRQTAASEYWAQKKEANS 174
Query: 605 ITKDAGEKVSKATTPFTTIIQSYGY 679
A + +I++ GY
Sbjct: 175 KFAAAKAAANAQLGDLQQLIEATGY 199
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 105 bits (252), Expect = 1e-21
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +2
Query: 458 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 637
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + +K+KR+TK A +K+ K
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 638 ATTPFTTIIQSYGYN 682
P+T +I+SYGYN
Sbjct: 64 QVAPYTAVIKSYGYN 78
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 102 bits (245), Expect = 1e-20
Identities = 56/158 (35%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Frame = +2
Query: 212 TSLXHKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTY 391
T + +K+K + +LRKR NP +GPFH RAPS +TVR M+P T+RG AL L Y
Sbjct: 64 TEIRNKIKYLQYLRKRKLTNPTKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAY 123
Query: 392 DGCPP-PFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 568
+G PP C + R Y +G + +GWKY DVV LE R KA
Sbjct: 124 EGIPPNVVRTGGRVVIPRAQRHVCYRSERPYTVLGNMCKHVGWKYSDVVANLEKARVEKA 183
Query: 569 VKRVAYEKKLKRITKDA-GEKVSKATTPFTTIIQSYGY 679
+ + KL+ K A E ++K +++ +GY
Sbjct: 184 SRHHEKQAKLRDAWKSARKEALAKMPKHNVEVLKKFGY 221
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 93.9 bits (223), Expect = 5e-18
Identities = 50/131 (38%), Positives = 70/131 (53%)
Frame = +2
Query: 245 FLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 424
FL K N NP GPFH RAP + + VRGMIP+KT RG +A L+ Y+G P + +
Sbjct: 55 FLNKTTNSNPRDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYK 114
Query: 425 XXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKR 604
+ R +GRLS +GWKY +VV +LE++RK ++ K +K +
Sbjct: 115 RLVIPHALRCVSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEEQRKAESAKYFEAKKAAQD 174
Query: 605 ITKDAGEKVSK 637
A EKV+K
Sbjct: 175 KRAAAIEKVNK 185
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 90.6 bits (215), Expect = 4e-17
Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = +2
Query: 233 KLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 412
K S +K+ N NP RGPFHF++PSK L++T++ MIPHKT RG AL+ L+ ++G P F
Sbjct: 50 KYKSIFKKKTNTNPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEGLPRIF 109
Query: 413 DNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDK--RKGKAVKRVAY 586
+K R ++G++ +GWK R + + D+ GK V +
Sbjct: 110 SKIKKEKFFEAFRYKVIKNYRKTVNLGKVCEVLGWKNRKFIEQKSDQLAALGKVVLKKKK 169
Query: 587 EKKLKRI 607
E K RI
Sbjct: 170 EIKKFRI 176
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 87.8 bits (208), Expect = 3e-16
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Frame = +2
Query: 233 KLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 412
K +L KRC VNP RGPFHFR P L K +R MI +K RGK A+ RL TY+G P
Sbjct: 53 KFKQYLNKRCLVNPRRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPREL 112
Query: 413 DNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGK----AVKRV 580
+ + P R Y +G+L GWK+ + + L D+ K + ++++
Sbjct: 113 EGQPRYKVTCAFVKYTGNPNR-YVTLGKLLSMFGWKHAEAAKSLTDELKERESLASLQKK 171
Query: 581 AYEKKLKRITKD 616
+KK++ + D
Sbjct: 172 DLDKKIEELKTD 183
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 58.8 bits (136), Expect = 2e-07
Identities = 30/89 (33%), Positives = 46/89 (51%)
Frame = +2
Query: 257 RCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 436
R NP RGPF+ + + + +T+RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 56 RTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETI 115
Query: 437 XXXXXXFCLKPGRNYCHVGRLSHEIGWKY 523
+P Y VG ++ +G K+
Sbjct: 116 VEAHVSRLSRP--KYVTVGEVAKFLGGKF 142
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 54.4 bits (125), Expect = 3e-06
Identities = 30/92 (32%), Positives = 45/92 (48%)
Frame = +2
Query: 245 FLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 424
+L+K +P +GPF+ R P + VRGM+P KT+RG+ A +RLR Y G P +
Sbjct: 63 WLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN 122
Query: 425 XXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 520
Y +G LS E+G++
Sbjct: 123 IEPERVAEADMSRLGHLWYVTLGELSEELGYQ 154
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 52.8 bits (121), Expect = 1e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 500 SHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
+HE+GW+Y+ +V KLE+KRK K +K ++ + A EK T + +++ YGY
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAKTAVYDKVLEQYGY 60
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 52.8 bits (121), Expect = 1e-05
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 245 FLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPH-KTERGKNALRRLRTYDGCPPPFDNX 421
FL +NP GP H+R P + K +R M+P+ + GK +++RLR Y G P +
Sbjct: 64 FLEINSIINPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLRAYIGSPKELKSL 123
Query: 422 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGW 517
K NY +G L IGW
Sbjct: 124 EKIQFEKAKIK---KSPSNYTTMGELCRVIGW 152
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/91 (30%), Positives = 40/91 (43%)
Frame = +2
Query: 245 FLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 424
FL+ ++P GP+H R P + + +RGM+P K GK A RLR Y G P +
Sbjct: 50 FLKIASIIHPEHGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFE 109
Query: 425 XXXXXXXXXXFCLKPGRNYCHVGRLSHEIGW 517
+P NY + L +GW
Sbjct: 110 KRKLKGAE---ITRPTANYTTMADLGETVGW 137
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 49.6 bits (113), Expect = 1e-04
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +2
Query: 281 GPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFC 460
GP+ + P + L +T+RGM+P+K RG++A+ RL+ Y G P++
Sbjct: 62 GPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADADMR 119
Query: 461 LKPGRNYCHVGRLSHEIGWKY 523
L Y +G +S ++G K+
Sbjct: 120 LLSSNKYVELGEVSQKMGSKF 140
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 48.0 bits (109), Expect = 3e-04
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = +2
Query: 278 RGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
+GP+ R P + +TVRGM+P K+ RG++A RRLR + G P
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 47.6 bits (108), Expect = 4e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 356 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 508
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 47.2 bits (107), Expect = 5e-04
Identities = 27/106 (25%), Positives = 44/106 (41%)
Frame = +2
Query: 239 MSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 418
+ + + NP+ GPF F P TV+ ++P+K + + L L+ +D +
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETLEHLKVFDKTKQMIIS 65
Query: 419 XXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 556
CL G L++E GWKY+ V LE K+
Sbjct: 66 VQICVSEATSRFACL---------GYLTYESGWKYQVVTNTLEKKK 102
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 45.6 bits (103), Expect = 0.002
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 239 MSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
M R + GP++ + P + + +RGM+P+KTE G+ AL +R Y G P
Sbjct: 54 METYHTRAELGSDSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 45.6 bits (103), Expect = 0.002
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 278 RGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
+GPF+ + P L + +RGM+P KT RG+ L+ ++ Y G P
Sbjct: 65 KGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 254 KRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
KR ++ G F+ + P +T+RGM+PHK +RG+ A +R Y G P
Sbjct: 59 KRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 44.8 bits (101), Expect = 0.003
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 257 RCNVNPAR-GPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
R + NP + GP R P + + VRGM+P K+E G++AL+RLR Y P
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 43.6 bits (98), Expect = 0.006
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +2
Query: 296 RAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGR 475
R P + VRGM+P RG+ AL RLR Y G P D +
Sbjct: 79 RTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVP---DELKGREFVRFPEADASRLSS 135
Query: 476 NYCHVGRLSHEIGWK 520
+Y +G ++ ++GWK
Sbjct: 136 HYIELGAVARQLGWK 150
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 41.9 bits (94), Expect = 0.019
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 236 LMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPH-KTERGKNALRRLRTYDGCP 403
L + RK +P +GPF R P L +TVRGM+P+ K G+ A++ LR G P
Sbjct: 57 LADYDRKYKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTP 113
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 40.3 bits (90), Expect = 0.059
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 269 NPA-RGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 418
NP RGP + + P + + VRGM+P + G+++L+RL Y G P + N
Sbjct: 67 NPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRN 117
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 37.5 bits (83), Expect = 0.42
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 248 LRKRCNV-NPAR-GPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
LR R ++ NP + GP + R P + + +RGM+P+K RG A ++++ G P
Sbjct: 52 LRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVP 105
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 36.3 bits (80), Expect = 0.96
Identities = 23/117 (19%), Positives = 44/117 (37%)
Frame = +2
Query: 257 RCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 436
+ NP +GP+ F PS L K V+GM+ + + + ++ P +
Sbjct: 59 KTRTNPNKGPYFFSNPSSLLKKIVKGMLNKLNKSHTLLFKSVECFNDTPNRYIYNYKLFL 118
Query: 437 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 607
+ LKP + + + + GW+ R + K ++ KKL +
Sbjct: 119 KNSHKNYKLKPDSKFTKLYEILPKFGWQDRSSCTESNSKNGIRSTIYSFNSKKLNNL 175
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 35.5 bits (78), Expect = 1.7
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 269 NPAR-GPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 415
NP R G R+P + +T+RGM+P K+ +G+ L+ ++ Y G P F+
Sbjct: 68 NPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFE 116
>UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage
Barnyard|Rep: Gp80 - Mycobacterium phage Barnyard
Length = 1111
Score = 34.3 bits (75), Expect = 3.9
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +2
Query: 464 KPGRNYCHVG-----RLSHEI--GWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT-KDA 619
KP R C G +LS EI GWKYR R +RK + VKR+ YE K+ IT KD
Sbjct: 296 KPLRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKI--ITDKDF 353
Query: 620 GE 625
G+
Sbjct: 354 GD 355
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 33.9 bits (74), Expect = 5.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 245 FLRKRCNVNPARGPFHFRAPSKXLWK 322
+ RKR N NP RG FH R+P++ + K
Sbjct: 62 YQRKRVNTNPTRGAFHHRSPAEMVRK 87
>UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2;
Thermoplasmatales|Rep: Transposase related protein -
Thermoplasma acidophilum
Length = 350
Score = 33.9 bits (74), Expect = 5.1
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +2
Query: 488 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 637
+G+ + I KY+ + +KL+ K+K K +K++ + + RI +D KVSK
Sbjct: 157 LGKKAEHIHNKYKAIRKKLQKKKKYKLLKKI--KDRESRIVRDLNHKVSK 204
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 33.5 bits (73), Expect = 6.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 278 RGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 418
+GP++ + + L +++ M+P K G AL+R Y P +N
Sbjct: 60 KGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLEN 106
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,380,552
Number of Sequences: 1657284
Number of extensions: 14084605
Number of successful extensions: 35714
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 34468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35698
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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