Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_F01
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   149   5e-37
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   146   3e-36
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   138   9e-34
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    31   0.20 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   1.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.3  
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr...    26   5.8  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   5.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   7.7  

>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  149 bits (361), Expect = 5e-37
 Identities = 72/152 (47%), Positives = 93/152 (61%)
 Frame = +2

Query: 224 HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
           +KLK +++LRK C  NP+RG FHFRAPS+   K VRGM+PHKT RG+ AL  L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110

Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 583
           PPFD               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AF 168

Query: 584 YEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 679
           Y+ KL +  K A    +K  +P    +  +GY
Sbjct: 169 YQAKLAKQKKIAS---AKEASPVNQKLSQFGY 197


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  146 bits (355), Expect = 3e-36
 Identities = 69/139 (49%), Positives = 88/139 (63%)
 Frame = +2

Query: 224 HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
           +KLK +++LRK C  NP+RG FHFRAPS+   K VRGM+PHKT RG+ AL  L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIP 110

Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 583
           PPFD               LKPGR YC VGRLS E+GWKY D+V KLE++RK K+     
Sbjct: 111 PPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AF 168

Query: 584 YEKKLKRITKDAGEKVSKA 640
           Y+ KL +  K A  K + +
Sbjct: 169 YQAKLAKQKKIASAKAASS 187


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  138 bits (334), Expect = 9e-34
 Identities = 60/115 (52%), Positives = 78/115 (67%)
 Frame = +2

Query: 224 HKLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCP 403
           +KLK +++LRK C  NP+RG FHFRAPS+   K VRGM+PHKT RG  AL+ L+  +G P
Sbjct: 51  NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIP 110

Query: 404 PPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 568
           PPFD               LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 111 PPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 557 KGKAVKRVAYEKKLKRITKDAGEKVSKATTP 649
           KGK V R+ Y+ K   +  D+GE+++K   P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 494 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 628
           R S E   K  D   K E+KR+ K  K+   EKK K+  K+  +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 536 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFT 655
           R  + KR+ K  +R+AYE+ LKR  K   EK +K++   T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 548 DKRKGKAVKRVAYEKKLKRITKDAGE-KVSKATTPFTTIIQSYG 676
           DKR+   +  + YEK+L+ + K+  E  +     P  ++I+ YG
Sbjct: 18  DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 381 SLLRAFLPRSVLCGIIPLTVFHRXLDGAL 295
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 122 WAVWRQSSPRSFSXGTKL-LW-FAAHKSIS 205
           WA+W  S PRS      L +W FA  K+IS
Sbjct: 139 WALWVLSLPRSIYGSVSLTVWNFAVQKTIS 168


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 PSRRAQSCCGSLRTNQSLWQLL*XTNSSLCHSC 251
           P+   QSC    +T  SLW+     NS LC++C
Sbjct: 5   PAPFGQSCSNCHKTTTSLWR-RGPDNSLLCNAC 36


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 402 GHPSYVRSLLRAFLPRSVLCGIIP 331
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,693
Number of Sequences: 5004
Number of extensions: 56097
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)