Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_F01
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 149 4e-36
07_01_0071 - 522920-523063,524125-524212,524289-524677 148 5e-36
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 109 4e-24
11_04_0056 + 12942802-12942920,12943022-12943115 58 7e-09
04_03_0232 - 13049649-13052807 31 1.1
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 31 1.5
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 29 3.5
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 3.5
05_03_0238 - 10783451-10783735,10784686-10785762 29 6.1
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 28 8.1
04_03_0148 + 11869929-11869968,11870000-11870421 28 8.1
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 149 bits (360), Expect = 4e-36
Identities = 66/129 (51%), Positives = 90/129 (69%)
Frame = +2
Query: 227 KLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPP 406
K+K + FLRKR N P+ GP HFR+P+K LW+TVRGMIPHKT+RG+ AL RL+ Y+G PP
Sbjct: 56 KMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPP 115
Query: 407 PFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY 586
P+D L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY
Sbjct: 116 PYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAY 173
Query: 587 EKKLKRITK 613
+++ K++ K
Sbjct: 174 DRR-KQLAK 181
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 148 bits (359), Expect = 5e-36
Identities = 66/129 (51%), Positives = 88/129 (68%)
Frame = +2
Query: 227 KLKLMSFLRKRCNVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPP 406
K+K + FLRKR N P+ GP HFRAPS+ W+TVRGMIPHKT RG+ AL L+ +DG PP
Sbjct: 56 KMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPP 115
Query: 407 PFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY 586
P+D L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY
Sbjct: 116 PYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAY 173
Query: 587 EKKLKRITK 613
E++ K++T+
Sbjct: 174 ERR-KQLTR 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 109 bits (261), Expect = 4e-24
Identities = 45/92 (48%), Positives = 59/92 (64%)
Frame = +2
Query: 263 NVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 442
N P+ GP HFR+P+K LW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 443 XXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 538
L+PG YC +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 7e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 356 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 523
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 566 PCPSSCLQAYEQHHGISIQFHGTVCLH 486
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 504 MKLDGNTVMLFVSLKTRGRARLLRELPMKRNLRGSPRMLVRRCRRRQHHSLPS 662
MK D +L VS LL+EL ++ LR ++ RCR+ HH + S
Sbjct: 92 MKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHVES 144
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 263 NVNPARGPFHFRAPSKXLWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 409
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 619 W*EGVEGDNTIHYHHPILWIQLGLRNYNKNKPFG 720
W +G++ D + HHP L++ R Y K P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 494 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 625
+L +EI RD+ ++ EDK +K A E K ++ K E
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 62 LCXCRAFAIRPSC----SLAVVICWAVWRQSSPRSFS 160
LC CR ++ C ++ ++ W +W++ + R F+
Sbjct: 603 LCDCRKKMVKEHCRGFDTIVTLVAWTIWKERNNRVFN 639
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 101 SLAVVICWAVWRQSSPRSF 157
SL ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,181,592
Number of Sequences: 37544
Number of extensions: 415308
Number of successful extensions: 1102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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