Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E23
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    28   2.0  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   6.1  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    26   6.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   8.1  

>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 508 LHPLLVSGMHLKVLCCNFLWFLIHFLDSH*C 416
           ++PLL    +LK+ CC+F    I F+  H C
Sbjct: 70  VYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -2

Query: 627 HTKQVCLTILYILYD-TIHQ*IAVCFSVFFKLTPSTEYINIYIHY*FLACI*KYCVAISY 451
           HTK   +++ Y+ Y+ T+ +      S F+ LTP        I Y  L  +    + + Y
Sbjct: 446 HTKASTMSLPYLSYNATVGR-----NSAFYALTPVEREELAGIEYESLRIL--TVILVVY 498

Query: 450 GF*YIFWTVINVVKLYIFIY 391
              ++FW ++ +V   IFIY
Sbjct: 499 ---FLFWHILGLVAFLIFIY 515


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 591 VYTKLSSIPVLCEHPIVXCYNRFLGN 668
           V + L S+ V  +   V CY RFLGN
Sbjct: 117 VMSVLDSVWVSRDESFVRCYTRFLGN 142


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 550  RFLQTHSKHR---IYQHLHPLLVSGMHLKVL 467
            R+ + HSKH    +Y+  HP+L S + + +L
Sbjct: 948  RYSKQHSKHLESVVYEEYHPILHSNITIPIL 978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,762
Number of Sequences: 5004
Number of extensions: 66611
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)