Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_E23
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 30 2.8
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796... 29 3.7
08_02_0184 + 13947739-13947930,13948289-13948465,13948546-139486... 29 3.7
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 29 6.4
05_01_0239 - 1785699-1785980,1786061-1786284,1786380-1786526,178... 29 6.4
11_01_0313 - 2328495-2328936,2330562-2330881 28 8.5
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Frame = +1
Query: 265 MEVGLVQXXXXXYDCLERYTKIHEKVPPDFDIIYQVTYIAASINKNIQFYNINDCPKNVL 444
++V L + CL +++ + PP + I+ Q + I DCP
Sbjct: 586 LQVALQRPPQYACGCLFILSEVLKAKPPLWAIVLQNESVDDGIEHFEDIVENTDCPAITS 645
Query: 445 ETIGNCNTIL--LDACQKLIMDVNVDIFCA--WSEFEENGKTNS 564
T CN IL L+ C D I C S E++GK S
Sbjct: 646 RTTDKCNDILATLEKCNSDAEDACDTIECVSPISSGEKDGKGTS 689
>08_02_1247 +
25578291-25578305,25579084-25579197,25579497-25579628,
25579726-25579854,25580024-25580421,25580503-25580602,
25580734-25580793,25580881-25580967,25581058-25581186,
25581260-25581559
Length = 487
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = -2
Query: 213 EVQQSFWYNFGNALRFHLIKYYFL--VREIETCLICKLMYNM--LMIFLPTFVNSLMDC 49
E Q FW N NAL H Y L R T +I K YN+ L + NS++ C
Sbjct: 280 EEQLCFWINIHNALVMHAFMAYGLQEKRMKNTDMILKAAYNVGGLSVNAQIIQNSIIGC 338
>08_02_0184 +
13947739-13947930,13948289-13948465,13948546-13948665,
13948709-13948753,13948848-13949012,13949324-13949402,
13949552-13949631,13950548-13950616,13950948-13951031
Length = 336
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +3
Query: 30 GILKIYYNPLDCSQKLAKISLACYTLICRLNMFQFPEQENNTLLSETLKH--FQNCT--- 194
G+L+ +NP++ +Q K AC +++ FQ E + L+ L+H F+N
Sbjct: 115 GVLRENFNPVEIAQAYEKNGAACLSILTDEKYFQV-ALELDVLMDLELEHGSFENLAKVR 173
Query: 195 KNFVEPPNSYKLETLQKDELYIHNGSWLSSALVTTL*LP 311
K+ V+ P K + K ++Y + L+ LP
Sbjct: 174 KSGVKCPLLCKEFVIDKWQIYYARSQGADAILLIAAVLP 212
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 90 LACYTLICRLNMFQFPEQENNTLLSETLKHFQNCTKNFVEPPNSYKLETLQKDELYIHNG 269
L C+ +F F E E+ +LL+ L ++ ++ L T++ ++ +G
Sbjct: 51 LQCHFADASFMVFNFREGESQSLLANILSSYEMVVMDYPRQYEGCPLVTIEMIHHFLRSG 110
Query: 270 -SWLS 281
SWLS
Sbjct: 111 ESWLS 115
>05_01_0239 -
1785699-1785980,1786061-1786284,1786380-1786526,
1786667-1786775,1786880-1786981,1787090-1787164,
1787277-1787453,1787534-1787623,1787717-1787844,
1787909-1788356
Length = 593
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 51 NPLDCSQKLAKISLACYTLICRLNMFQFPEQENNTLLSETLKHFQNCTKNFVEPPNSYKL 230
NPL C I L+C +C L + F E N L H +N T + E +S+ +
Sbjct: 321 NPLTC------IKLSCVISLCALPLLIFLCGEMNRLADGIFDHSENTTSH-AEKTSSFSI 373
Query: 231 -ETLQKDELYIHNG 269
+T+++ + NG
Sbjct: 374 RKTVEEAVATVRNG 387
>11_01_0313 - 2328495-2328936,2330562-2330881
Length = 253
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 135 PEQENNTLLSETLKHFQNCTKNFVEPPNSYKLETLQK 245
P+Q N TL S +++ N + V PP +T++K
Sbjct: 206 PDQSNRTLYSPSVEGDNNLPSSEVNPPGEINNQTMKK 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,845,842
Number of Sequences: 37544
Number of extensions: 336803
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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