Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E22
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   4.8  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   6.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   8.4  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 817 PGXTQDDSYRIRRSGRAERGVRGT 746
           PG T+D  +RI R+GRA  G +GT
Sbjct: 447 PGNTEDYVHRIGRTGRA--GAKGT 468


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -3

Query: 805 QDDSYRIRRSGRAERGVRGTQPSLERTTYTELRYLQR 695
           +D+  R R + +A++ + G++PS+E+T + E  + +R
Sbjct: 184 KDNDLRCRVNKKAKK-LFGSEPSIEKTNWIEAEFTRR 219


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 512 LXEHHKNRRSSQRWRNPTGL*RYQAF----PPG 598
           L ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 404 RIRGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLXEHHKNRRSSQRWRNPT 565
           R+     E T  +  S   G+   PR  RF++G+     +  N   +Q + N T
Sbjct: 511 RVTSRMSEHTGNRVVSFPRGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANAT 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,215
Number of Sequences: 5004
Number of extensions: 63039
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)