Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_E22
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1008 - 7987936-7988628,7988923-7989102 37 0.025
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 33 0.41
07_01_1201 - 11419851-11419913,11420090-11420311 30 2.2
03_06_0149 - 31987183-31987630,31987813-31987874 29 5.0
12_02_1188 + 26801833-26802225 29 6.6
04_03_1035 - 21887562-21890030 29 6.6
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 29 6.6
01_03_0308 - 14883728-14884120 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
10_07_0162 - 13713504-13714754,13716445-13716522 28 8.8
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 36.7 bits (81), Expect = 0.025
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 686 RKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETPG 579
R R RR GG+V+G+ R+RR GA++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 32.7 bits (71), Expect = 0.41
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 607 RELSRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 479
R LSRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 22 RVLSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 545 QRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 649
Q+WR+ PTG + +FP G LP A PA R P
Sbjct: 27 QQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 692 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 582
A+ + H R + + +R+GR R AHEG G P
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112
>12_02_1188 + 26801833-26802225
Length = 130
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 656 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 558
GG SGKR AHEG +G P +++V G
Sbjct: 33 GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64
>04_03_1035 - 21887562-21890030
Length = 822
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 722 LHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGE 588
++R +P + + A RR+ GG S R HE AF E
Sbjct: 493 VYRASLPDGREVAIKRAERRDTGGPSSSSAAAARRVDHEAAFVSE 537
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = -3
Query: 826 VSXPGXTQDDSYRIRRSGRAERGVRGTQPSLERTTYTELRYLQREL*ESATLPEGRKADR 647
+S P T D R RRS RG PSL+R + + +++ + L + + A+
Sbjct: 82 LSLPAETNDWCVRARRSALRSIEARGLSPSLQRMVASPKKKNKKKKSKKTNLKQKKAAEP 141
Query: 646 YP 641
P
Sbjct: 142 KP 143
>01_03_0308 - 14883728-14884120
Length = 130
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +1
Query: 505 RPPXRASQKSTLKSEVAKPDRTIKIPGVSPWKAPSCALLFRP---CRLPDTCPPFSLREA 675
R P + S + + +R +I G + PS A L+R C +CPP E
Sbjct: 48 RSPFPTTSPSMIDEQTT--ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREER 105
Query: 676 WR 681
WR
Sbjct: 106 WR 107
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 262 NESAN---ARGEAVCVLGALPLPRSLTRCAR 345
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 712 VRCRSFAPSWAVCXEPPVQPDRCALSGN 795
V R F P +C +P V+P++C G+
Sbjct: 44 VDARKFVPGAKMCMQPDVKPNKCKSRGS 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,215,650
Number of Sequences: 37544
Number of extensions: 512580
Number of successful extensions: 1592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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