Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E18
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0057 + 19683226-19684055,19685742-19687824                       30   2.9  
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268...    29   3.8  
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999...    29   3.8  
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626     29   5.0  
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181...    29   5.0  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   8.8  
07_03_1686 + 28657337-28658668                                         28   8.8  

>11_06_0057 + 19683226-19684055,19685742-19687824
          Length = 970

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 8    SLPTHYREFLKILIQLVE*YSCQYAIQRKRMLSYIYLALLVAASHVQSTPAAATAQNVIC 187
            +LP   R  + + ++  + Y  Q+ I+  R L  IY+ LL A +       A  A + I 
Sbjct: 851  ALPKLERLQMAVHVKEAKSYGYQFGIEHLRSLKKIYIQLLCAGASALDIKDAEDAIHTIV 910

Query: 188  KARNGYYKTD 217
            K   G+ + D
Sbjct: 911  KFHPGHPRID 920


>09_02_0533 -
           10325681-10326211,10326260-10326328,10326758-10326855,
           10326968-10327117,10327848-10327976,10328063-10328999
          Length = 637

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
 Frame = +2

Query: 272 CPDGLHFNPSVEWPAYP---CGYPVEVTCVGRGSIQPAQTTPDCPHQYGIFKHPNASPTN 442
           C DG   NP +    +    C  P + +C G  +  P     DCP  Y   +   ++P  
Sbjct: 297 CSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHICDCPRGY---ERNASTPNG 353

Query: 443 CGQYRTC 463
           C     C
Sbjct: 354 CKDIDEC 360


>03_02_0635 +
           9994327-9994644,9995510-9995706,9995806-9995941,
           9996019-9996270,9996356-9996588,9996695-9996812,
           9996884-9997036,9997126-9997212,9997407-9997697
          Length = 594

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 197 NGYYKTDANCDTYIECRDYQATNMICPDGLHFNPSVEWP 313
           +G+YK +  C  Y++  D+      CPDG  F+P  + P
Sbjct: 428 HGFYKANGGCG-YVKKPDFMMQT--CPDGNVFDPKADLP 463


>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
          Length = 369

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 527 RCDWADLVPSCDAEKFLGFT 586
           +CDW  ++  C  + FLGFT
Sbjct: 167 QCDWHSILKMCQVQGFLGFT 186


>05_04_0022 -
           17217626-17217643,17217740-17217856,17217987-17218112,
           17218194-17218340,17218423-17218533,17218625-17218747,
           17218827-17218958,17219157-17219252,17219532-17219653,
           17219833-17220130,17220213-17220458,17220711-17220852,
           17221068-17222105,17222183-17222262,17222558-17222800,
           17222907-17222967,17224059-17224675
          Length = 1238

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 642 YKYEGNCYYFFSW*AKSG*IAVLRHRSCIRPHDWTVPSTQ-TESSAMQRKTQMTRI 806
           Y + G  Y   +W AK   +    HR+ IR  DW  P  Q TE      K+  T I
Sbjct: 771 YSWSGESYTA-AWLAKKAGLTSTSHRNMIRNIDWVDPCLQDTEIGPWSSKSARTII 825


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 77  YAIQRKRMLSYIYLALLVAASHVQSTPAAATAQNVICK-ARNGYYKTDANCDTYIECRDY 253
           + +QR   + Y+YLA+++    + +      A   + +  RNG +   A+C  Y+     
Sbjct: 736 FIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQ 795

Query: 254 QATNMICPDGLHFNPSVEWPA 316
             T ++    + F  + + PA
Sbjct: 796 VVTKVVFRRDISFKLTSKLPA 816


>07_03_1686 + 28657337-28658668
          Length = 443

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -1

Query: 532 TAAEVWIEC*SRRAYHVESTTTYACSVLATIGGRSVRMFEDAILVRAIR-CCLGRLDAPS 356
           T A V  E  SR+ Y+      ++C V+  +       F DA LV   R    G+   P+
Sbjct: 200 TPAYVAPEILSRKGYNPAKVDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPA 259

Query: 355 SYTCHFNWITARICRPFHA-RIKVQTI 278
            ++     +  RI  P  A RI  + I
Sbjct: 260 WFSPELRCLVRRILDPNPATRIDTEEI 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,229,739
Number of Sequences: 37544
Number of extensions: 632257
Number of successful extensions: 1619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)