Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E14
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            153   2e-37
10_07_0174 + 13815478-13815903                                        153   2e-37
03_02_0943 + 12598616-12598789,12599790-12601250                       31   0.90 
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    31   1.2  
06_01_0889 - 6807449-6809257                                           30   2.8  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  153 bits (371), Expect = 2e-37
 Identities = 73/122 (59%), Positives = 97/122 (79%)
 Frame = +2

Query: 92  MGRVRTKTVKXAAKXIIEKYYTXLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 271
           MGRVRTKTVK  ++ +IEKYY+ +TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60

Query: 272 LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLT 451
           ++   VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML  L   ++ G+ + 
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VR 119

Query: 452 QP 457
           QP
Sbjct: 120 QP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  153 bits (370), Expect = 2e-37
 Identities = 71/121 (58%), Positives = 95/121 (78%)
 Frame = +2

Query: 92  MGRVRTKTVKXAAKXIIEKYYTXLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 271
           MGRVRTKTVK  ++ +IEKYY+ +TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query: 272 LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLT 451
           ++   VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML  L   ++ G++  
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120

Query: 452 Q 454
           Q
Sbjct: 121 Q 121


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 19/60 (31%), Positives = 35/60 (58%)
 Frame = +2

Query: 242 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLD 421
           A +++HL+RR+        + K Q EE ++  +   + + LEHD+I  + +T D+LK L+
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVLKELE 96


>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 495 INYACHHSHPWVA---GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADT 352
           IN+   HS  W     GC +      +K+ +F+I LVS   S+++C  A T
Sbjct: 132 INWLKSHSASWTVADFGCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 272 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 394
           LRH Q R I ++ +    R R + YVP+     HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,496
Number of Sequences: 37544
Number of extensions: 301302
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)