Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_E07
(929 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 34 0.17
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 0.90
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 1.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 1.6
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 31 1.6
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 31 1.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 25 5.5
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 28 8.3
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 28 8.3
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.3
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 28 8.3
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 33.9 bits (74), Expect = 0.17
Identities = 25/79 (31%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Frame = -3
Query: 702 GPXGKKXXKGXXLXXGPLG--GPLXKKFXPGXXPXPXGKXXXPPWXXEKPXPPPKXPGXG 529
GP G G GP G GP + PG P P G+ P P G
Sbjct: 265 GPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQ-PGPDGQPGAPGNDGTPGTDAAYCPCPG 323
Query: 528 XXGGGXGXGAQKXXPXPXG 472
GGG G GA P G
Sbjct: 324 RGGGGGGYGAGAHHGGPQG 342
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 27.9 bits (59), Expect(2) = 0.90
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 561 PXPPPKXPGXGXXGGGXGXG 502
P PPP G G GGG G G
Sbjct: 54 PPPPPPACGGGCGGGGGGCG 73
Score = 22.2 bits (45), Expect(2) = 0.90
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -3
Query: 522 GGGXGXGAQKXXPXPXGGG 466
GGG G G P P GG
Sbjct: 102 GGGCGGGCAPPPPPPACGG 120
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -3
Query: 621 PGXXPXPXGKXXXPPWXXEKPXPPPKXPGXGXXGGGXGXGAQKXXPXPXGGG 466
P P P P P PPP P G G G P P G G
Sbjct: 610 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 661
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -3
Query: 621 PGXXPXPXGKXXXPPWXXEKPXPPPKXPGXGXXGGGXGXGAQKXXPXPXGGG 466
P P P P P PPP P G G G P P G G
Sbjct: 436 PPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 487
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 555 PPPKXPGXGXXGGGXGXGAQKXXPXPXGGGXXXKXKKKF 439
PPP P GGG G A P P GG + + F
Sbjct: 63 PPPPPPPPAPIGGGAGYAAPFGGPGPVGGASYSQGPQGF 101
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 555 PPPKXPGXGXXGGGXGXGAQKXXPXPXGGGXXXKXKKKF 439
PPP P GGG G A P P GG + + F
Sbjct: 63 PPPPPPPPAPIGGGAGYAAPFGGPGPVGGASYSQGPQGF 101
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 561 PXPPPKXPGXGXXGGGXGXGAQ-KXXPXPXGGG 466
P P P G G GGG G G P P GGG
Sbjct: 50 PPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 561 PXPPPKXPGXGXXGGGXGXGAQ-KXXPXPXGGG 466
P P P G G GGG G G P P GGG
Sbjct: 50 PPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 648 GGPLXKKFXPGXXPXPXGKXXXPPWXXEKPXPPPKXPGXGXXGG 517
GGP G P G PP P PPP P G GG
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +3
Query: 795 PPGXXPP--XGPXLXPPPXX*REIXXPXFXPXGXXGGGXXXSPP 920
PPG PP GP PPP P P G GG PP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 648 GGPLXKKFXPGXXPXPXGKXXXPPWXXEKPXPPPKXPGXGXXGG 517
GGP G P G PP P PPP P G GG
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +3
Query: 795 PPGXXPP--XGPXLXPPPXX*REIXXPXFXPXGXXGGGXXXSPP 920
PPG PP GP PPP P P G GG PP
Sbjct: 747 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -3
Query: 648 GGPLXKKFXPGXXPXPXGKXXXPPWXXEKPXPPPKXPGXGXXGG 517
GGP G P G PP P PPP P G GG
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Frame = +3
Query: 795 PPGXXPP--XGPXLXPPPXX*REIXXPXFXPXGXXGGGXXXSPP 920
PPG PP GP PPP P P G GG PP
Sbjct: 330 PPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/78 (28%), Positives = 23/78 (29%)
Frame = -3
Query: 702 GPXGKKXXKGXXLXXGPLGGPLXKKFXPGXXPXPXGKXXXPPWXXEKPXPPPKXPGXGXX 523
GP G + G GP G P PG P P G E P PG
Sbjct: 162 GPPGPEGPNGTAGNKGPAGPP-----GPGGKPGPAGPPGENGRNGEPQPGSPGEPGRPGQ 216
Query: 522 GGGXGXGAQKXXPXPXGG 469
G G Q GG
Sbjct: 217 PGSRGPAGQPGKDGAQGG 234
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 25.4 bits (53), Expect(2) = 5.5
Identities = 23/79 (29%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Frame = +1
Query: 595 PPGXGVXPGXKFFXQRAPKGPX-----PQXGPFXXFFSPGPXPPXRXLKNXXXXXXXXXX 759
PPG P F + P GP P GP +PG P +
Sbjct: 386 PPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPG----APGSYGPPQGGPGGFGPPPPGGP 441
Query: 760 XAXGFXXXPRGFPPXXXPP 816
A G P GFPP PP
Sbjct: 442 GAYG--PPPTGFPPVGAPP 458
Score = 21.8 bits (44), Expect(2) = 5.5
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = +1
Query: 466 PPPXGXGXXFLGPXPXXPPXXPXPR 540
PPP G G P PP P+
Sbjct: 321 PPPQGAPQQGFGAPPQGPPQGGPPQ 345
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = -3
Query: 582 PPWXXEKPXP--PPKXPGXGXXGGGXGXGAQKXXPXPXG 472
PP P P PP PG GG G G + P P G
Sbjct: 143 PPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRG 181
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = -3
Query: 582 PPWXXEKPXP--PPKXPGXGXXGGGXGXGAQKXXPXPXG 472
PP P P PP PG GG G G + P P G
Sbjct: 143 PPGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRG 181
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Frame = -3
Query: 702 GPXGKKXXKGXXLXXGPLG--GPLXKKFXPGXXPXPXGKXXXPPWXXEKPXPPPKXPGXG 529
G G G GP G GP + P P GK P PP PG G
Sbjct: 171 GAPGDAGKDGPPGPPGPDGDSGPNGEA-GPNGEPGAPGKDGEKGKGEPGPAGPPGPPGPG 229
Query: 528 XXGGGXGXGAQKXXPXPXG 472
G G P P G
Sbjct: 230 GPPGDAGGAGSDGAPGPQG 248
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/75 (26%), Positives = 25/75 (33%)
Frame = -3
Query: 702 GPXGKKXXKGXXLXXGPLGGPLXKKFXPGXXPXPXGKXXXPPWXXEKPXPPPKXPGXGXX 523
GP G + G G G P + PG P + PP P PP PG
Sbjct: 93 GPQGPQGTPGKPGKPGKPGAP-GQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGI 151
Query: 522 GGGXGXGAQKXXPXP 478
G G ++ P
Sbjct: 152 PGDNGPPGEQGPKGP 166
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 603 PXGKXXXPPWXXEKPXPPPKXPGXGXXGGG 514
P PP P PPP P G GGG
Sbjct: 51 PAAGYPRPPIGYGAPPPPPPPPAFGGLGGG 80
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 603 PXGKXXXPPWXXEKPXPPPKXPGXGXXGGG 514
P PP P PPP P G GGG
Sbjct: 51 PAAGYPRPPIGYGAPPPPPPPPAFGGLGGG 80
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 603 PXGKXXXPPWXXEKPXPPPKXPGXGXXGGG 514
P PP P PPP P G GGG
Sbjct: 51 PAAGYPRPPIGYGAPPPPPPPPAFGGLGGG 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,481
Number of Sequences: 27780
Number of extensions: 268898
Number of successful extensions: 1107
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -