Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E06
         (1065 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012...    41   0.001
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788...    41   0.002
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352...    29   8.3  

>10_08_0381 +
           17398972-17399014,17400823-17400981,17401066-17401241,
           17401565-17401842,17401938-17402073,17402183-17402294,
           17402421-17402515
          Length = 332

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +1

Query: 373 GAQQPVFLHLLDIAPMMGVLEGVVMXLADCALPL 474
           GA QPV LH+LDI P    L G+ M L D A PL
Sbjct: 32  GADQPVILHMLDIPPATESLNGLKMELVDAAFPL 65



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 287 EPIRVVVTGAXGQIAYSFL 343
           EP+RV+VTGA GQI Y+ +
Sbjct: 4   EPMRVLVTGAAGQIGYALV 22


>04_04_0724 +
           27578337-27578371,27578492-27578607,27578717-27578875,
           27578954-27579129,27580406-27580683,27580759-27580894,
           27580984-27581095,27581177-27581268
          Length = 367

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 20/34 (58%), Positives = 21/34 (61%)
 Frame = +1

Query: 373 GAQQPVFLHLLDIAPMMGVLEGVVMXLADCALPL 474
           GA QPV LHLLD+      L GV M L D ALPL
Sbjct: 68  GADQPVVLHLLDLPVAANALNGVRMELIDAALPL 101


>08_02_1600 +
           28133818-28133900,28134240-28134345,28135169-28135255,
           28135354-28135438,28135510-28135691,28135921-28135991,
           28136078-28136168,28136250-28136324,28136436-28136537,
           28136620-28136742,28136823-28136891,28136990-28137058,
           28137158-28137211,28137315-28137368
          Length = 416

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 373 GAQQPVFLHLLDIAPMMGVLEGVVMXLADCALPL 474
           G  QP+ L LL     +  LEGV M L D   PL
Sbjct: 100 GPDQPIALKLLGSERSIQALEGVAMELEDSLYPL 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,534,015
Number of Sequences: 37544
Number of extensions: 256699
Number of successful extensions: 284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3164520116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)