Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E06
         (1065 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...    41   0.001
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...    41   0.001

>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = +1

Query: 373 GAQQPVFLHLLDIAPMMGVLEGVVMXLADCALP 471
           G +QPV L LLD+     +LEGVV  L DCALP
Sbjct: 31  GKEQPVELVLLDVPQCSNILEGVVFELQDCALP 63



 Score = 31.9 bits (69), Expect = 0.80
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 281 MAEPIRVVVTGAXGQIAYSFL 343
           M+ P+RV+VTGA GQI YS +
Sbjct: 1   MSAPLRVLVTGAAGQIGYSIV 21


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/33 (57%), Positives = 22/33 (66%)
 Frame = +1

Query: 373 GAQQPVFLHLLDIAPMMGVLEGVVMXLADCALP 471
           G +QPV L LLD+     +LEGVV  L DCALP
Sbjct: 31  GKEQPVELVLLDVPQCSNILEGVVFELQDCALP 63



 Score = 31.9 bits (69), Expect = 0.80
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 281 MAEPIRVVVTGAXGQIAYSFL 343
           M+ P+RV+VTGA GQI YS +
Sbjct: 1   MSAPLRVLVTGAAGQIGYSIV 21


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,620
Number of Sequences: 27780
Number of extensions: 202283
Number of successful extensions: 275
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2845728736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)