Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E05
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...   156   5e-39
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    33   0.054
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    29   0.67 
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    29   0.88 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   4.7  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   4.7  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   4.7  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.2  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   8.2  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    26   8.2  

>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score =  156 bits (378), Expect = 5e-39
 Identities = 74/128 (57%), Positives = 89/128 (69%)
 Frame = +2

Query: 458 ESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTA 637
           E GL V+ACIGETL ERE+ +T  VV RQL A+   +   W  IV+AYEPVWAIGTGKTA
Sbjct: 118 EQGLTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGKTA 176

Query: 638 TPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASL 817
           TP+QAQ+VH  +R W +  +  SV++ +R+ YGGSV   N KE     DIDGFLVGGASL
Sbjct: 177 TPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASL 236

Query: 818 XPEXVXIV 841
            PE   IV
Sbjct: 237 KPEFHNIV 244



 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 48/117 (41%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
 Frame = +1

Query: 109 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVE 285
           M RKF VGGN+KMNG    +  I+  L    L+  +VE ++    +YL   +  +  ++ 
Sbjct: 1   MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIG 60

Query: 286 VAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHAL 456
           V AQN +    GA+TGE S   + D G+ + + GHSERRTIF E DE VA+K   AL
Sbjct: 61  VGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFAL 117


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -3

Query: 417 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 256
           F  + ++   TK N + SN+F+H+  + T +SS     T L     IIRNDS H
Sbjct: 26  FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 526 LSLARFSLFESLTNTGNDFQARFQGHEQPFQQ 431
           LSLA FSL +   N  N + + FQ HE   Q+
Sbjct: 104 LSLAEFSLIKDAQNYLNKYASYFQAHEPTLQK 135


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 599 YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 727
           Y  +W++G       TP+  + VH  LR WL   V G   DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 573 SPMADTKAFN-CLKTTSSVLPDSLSSRVSPI-QAMTFKPDSKGMSNLFSNK 427
           SP+  TK+FN  L ++SS+L   + S  SP    ++  P +    NLF N+
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASPTSNRLSHAPST---PNLFPNQ 267


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 742 RATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNS 614
           +AT    + + Y P  +G     K   + LSL  + ++ C NS
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNFLSLADTPNIQCVNS 207


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 710 SDAVRIQYGGSVTAANAKELASCKDIDGFLVG 805
           SD  R Q+G S+  +NAKEL     I G+  G
Sbjct: 259 SDLSRGQHGKSIILSNAKELYKSVGIRGYYRG 290


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 674 EEHGGHLEPVGE*QSCLYQ*PIQVHRQAQYFP 579
           + +GG+L P  E  S  ++ PI++ R A Y+P
Sbjct: 69  KSYGGNLAPFDEEFSFHFRGPIELKRFAVYYP 100


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 645 WGVAVLPVPIAHTGS*ASTIFSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTF 469
           + + +LP  I    S A  +F   +P   ++ F CL   + +L   L+S V  +Q  ++
Sbjct: 226 YSLFLLPRLIRKQLSDAPIVFFLHAPFCTSEVFRCLSKRAEILKGVLASNVIAMQTDSY 284


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 528 SSVLPDSLSSRVSPIQAMTFKPDSKGMSNLFSNKFIFFTKNCSSFRMTKYNPIYSNV 358
           S +LPDS+ +RV   +A  ++ D K + +L  + + +   + SS      N   SNV
Sbjct: 19  SHILPDSIENRVISTEAPEWELD-KSLQDLLIHDYDYSKTSFSSSPPIVANDTVSNV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,571,129
Number of Sequences: 5004
Number of extensions: 77368
Number of successful extensions: 241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)