Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_E04
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0011 - 99475-99701,99846-99954,100051-100218,100867-101142 39 0.006
01_01_0596 + 4435643-4436664,4437241-4437766 32 0.53
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568... 30 2.1
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 29 3.7
11_02_0068 + 7991816-7992603,7995209-7997177 29 4.9
09_04_0377 + 17086775-17088310 29 4.9
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215... 29 4.9
12_02_1055 + 25725904-25726267,25726381-25726436 29 6.5
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388... 29 6.5
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930... 29 6.5
02_04_0044 - 19198001-19199236 29 6.5
11_01_0126 + 1021224-1021256,1021717-1022486,1022582-1022667,102... 28 8.6
03_05_0977 + 29355824-29357056 28 8.6
>03_01_0011 - 99475-99701,99846-99954,100051-100218,100867-101142
Length = 259
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 604 DTPLTRLGWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKV 777
D PLT G +A V + G I V SP +RC++TA + L P + IKV
Sbjct: 36 DPPLTDAGLLRASTVASRILADGFHIHRVLVSPFIRCLQTAAQAIAALSPLPRINIKV 93
>01_01_0596 + 4435643-4436664,4437241-4437766
Length = 515
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 711 SQRRRSVHVLDGDAGHPHPLPHQLRLEPSQSGQRGVFHVPSFTTGSVRQ 565
++ + V L+ H HP PH +R P GQ G F P F S Q
Sbjct: 310 NRTKELVEALEPAHAHGHPEPHAVRRRP--EGQSGAFSPPPFMEPSTAQ 356
>06_03_0272 +
19053455-19053587,19054665-19056627,19056827-19056887,
19056975-19057198,19057573-19057642,19058453-19058515
Length = 837
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -2
Query: 741 VQESLSSLDASQRRRSVH-VLDGDAGH-PHPLPHQLRLEPSQSGQRGVFHVPSFTTGS 574
VQ+S DA R + + D + H H P+QLR +PS G H PS S
Sbjct: 221 VQQSCEVTDAPSRSATTNRPADASSSHGAHDQPNQLRHDPSVLHWNGSHHSPSLNVQS 278
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 202 SESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSD 345
SESGSNT S G Y A+ E+ ++W+++ + S+
Sbjct: 227 SESGSNTPSIAEGLYEPHSQAESWQDDLEQERRDWEQFSHAITGEESE 274
>11_02_0068 + 7991816-7992603,7995209-7997177
Length = 918
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 646 VGEGMRM-AGVSIKHVYASPALRCVETAQG----FLDGLRADPSVKIKVEPGL 789
VG G ++ A I H+ R +E ++ LDGL + PSV++KV+P L
Sbjct: 97 VGFGQKLLASRRIGHMIRELKARVMEESERQRRYMLDGLASGPSVRVKVDPRL 149
>09_04_0377 + 17086775-17088310
Length = 511
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/89 (19%), Positives = 38/89 (42%)
Frame = +1
Query: 181 NNCSDCKSESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSDSILTI 360
++ SD + + S + + G+Y ED+ D KK +++ + + S T
Sbjct: 233 HHSSDTEGDDNSKAEEDSEGSYDSEDSMDRRKKKRSRRHKKSKRRGRSSRRKKRKSNDTA 292
Query: 361 TQGLPMNWELSKAAEEMKNNITNGTSKSR 447
++G ++ A+ + + + KSR
Sbjct: 293 SEGSSEEEAVAAASGSSPSPLRDSKKKSR 321
>06_01_0296 -
2156895-2157160,2157435-2157527,2157932-2158031,
2158634-2158738,2158832-2158972,2159056-2159568
Length = 405
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 750 TQAVQESLSSLDASQRRRSVHVLDGDAGHPHPLPHQLRLEPSQSGQ 613
T AV S ++ DA + DA HPHP PH ++ P + G+
Sbjct: 22 TAAVSPSAAA-DALRSLLDAGAGAADAAHPHPHPHLSKILPFRRGR 66
>12_02_1055 + 25725904-25726267,25726381-25726436
Length = 139
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/85 (21%), Positives = 38/85 (44%)
Frame = +1
Query: 166 AVSLGNNCSDCKSESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSD 345
A S + SD + E+G ++DSE +Y A+ A+ + ++++ Y R+
Sbjct: 55 ATSSDEDASDSEEEAGMSSDSEDDSSYNPPKIANTAFILEDSSHRDGSIYKGNSEWKRTY 114
Query: 346 SILTITQGLPMNWELSKAAEEMKNN 420
I + + L + + K ++ N
Sbjct: 115 RIADLEESLGSSCSILKPLTKIATN 139
>12_01_0490 +
3878436-3878466,3878559-3879113,3879218-3879777,
3880660-3880965,3881071-3881202,3881623-3881756,
3881939-3882015,3882084-3882226,3883376-3883633,
3884085-3884111
Length = 740
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 283 TSCMPDRRRLREDMSRPSHYRCSNPILI 200
+S +PD L D +PS Y C+ P+L+
Sbjct: 148 SSVLPDHPSLSNDPDKPSSYVCTPPLLM 175
>08_01_0941 -
9301603-9301788,9301866-9301958,9302060-9302120,
9302397-9302648,9302903-9303720,9303993-9304490
Length = 635
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Frame = +1
Query: 205 ESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNW 384
++G S A P++ L K S E Q KY N++ L T P
Sbjct: 18 KTGRTPFSTYANITPNQWEDFLTLKNSPEEIQRSQKYSELAKNNKFPHRLGFTGYAPKVE 77
Query: 385 ELSKAAEEMKN-----NITNGTSKSRRWVFA 462
+ +K EEM+ + T +SR WV A
Sbjct: 78 QWTKEGEEMRKAGLPVPMEKWTQRSRNWVRA 108
>02_04_0044 - 19198001-19199236
Length = 411
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 568 AHRAGGKGGYVKDTPLTRLGW 630
++ AG GG TPL RLGW
Sbjct: 259 SNSAGADGGAASPTPLVRLGW 279
>11_01_0126 +
1021224-1021256,1021717-1022486,1022582-1022667,
1024240-1024316,1025095-1025190,1025861-1026566,
1026732-1026775
Length = 603
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 870 TLRPALHSSMGVMKSIPLGMCQFLXXEQARLYFDLH 763
TL PAL S+ +M LG+ F +YF LH
Sbjct: 272 TLPPALEGSVQIMSRSGLGLAMFSMGCNTSVYFILH 307
>03_05_0977 + 29355824-29357056
Length = 410
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = +1
Query: 208 SGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNWE 387
S SNTD+ + +D A S + QE ++V+N++ + +T +N+
Sbjct: 292 SESNTDTAPVNLDGNHTGSDQANSTSLKGQQEQQANSTDVLNNQIKLFIDLTSAAELNYR 351
Query: 388 LSKAAEEMKNNITNGTSKSR 447
+ + N TS R
Sbjct: 352 PNGTLASASTDAENATSVDR 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,841,980
Number of Sequences: 37544
Number of extensions: 526851
Number of successful extensions: 1729
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -