Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_E02
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 192 6e-50
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 172 6e-44
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 29 0.66
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit... 28 2.0
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 3.5
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 26 8.1
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 26 8.1
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 192 bits (468), Expect = 6e-50
Identities = 105/231 (45%), Positives = 138/231 (59%), Gaps = 9/231 (3%)
Frame = +3
Query: 186 VGSGNWGSAXAQIVGRNA-AXLSNFEXXVTMWVYXXIIEGKX----LTEIINETHENVKY 350
VGSGNWG+A A+I G NA A +F V MWV+ IE K LTE+ NE HENVKY
Sbjct: 28 VGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVFNEAHENVKY 87
Query: 351 LPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFD 530
LPG + P NV+AVPDV E A+ AD+L+FVVPHQF+ +C ++G I+P A +S IKG
Sbjct: 88 LPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGAVGISCIKGVA 147
Query: 531 IAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRD--- 701
+++ G+ L S +I+ L I C VL GAN+A+EVA E+FCETTIG + R+
Sbjct: 148 VSK-EGVRLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIGFNPPNEVDIPREQIA 206
Query: 702 -IIQTDYFXXXXXXXXXXXXNMWSVKEHCGSGCGFVDGLGYGDNTKAAVIR 851
+ YF ++K GF DGL +G NTKAA++R
Sbjct: 207 AVFDRPYFSVVSVDDVAGVALGGALKNVVAMAVGFADGLEWGGNTKAAIMR 257
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 172 bits (418), Expect = 6e-44
Identities = 104/244 (42%), Positives = 137/244 (56%), Gaps = 11/244 (4%)
Frame = +3
Query: 156 FNSQSTKFAFVGSGNWGSAXAQIVGRNA-AXLSNFEXXVTMWVYXXII--EGKX--LTEI 320
F+ + +GSGNWG+A A+I G NA A F V MW+Y I EGK LTE+
Sbjct: 20 FSPKLISVGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEV 79
Query: 321 INETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 500
N THENVKYL G K PSNV A PD+ + +D+L++V+PHQFV IC+ L G +K A
Sbjct: 80 FNTTHENVKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDA 139
Query: 501 AALSLIKGFDIAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIG-CRDV 677
A+S IKG + + + L S II + C VL GANIASEVA+EKFCETTIG +
Sbjct: 140 VAISCIKGVSVTK-DRVRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIGYLPNS 198
Query: 678 MLAP-----LMRDIIQTDYFXXXXXXXXXXXXNMWSVKEHCGSGCGFVDGLGYGDNTKAA 842
+ P ++ + YF ++K G +DGL GDNTK+A
Sbjct: 199 SVNPRYTPKTIQALFNRPYFRVNIVEDVPGVALGGALKNIVAVAAGIIDGLELGDNTKSA 258
Query: 843 VIRL 854
V+R+
Sbjct: 259 VMRI 262
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 549 IDLISHIITRCLKIPCAVLMGANIASEVAEEKFCET----TIGCRDVMLAPLMRDII 707
+D+ + ++T C+ P +VL+ AS +A K C IG R LA +R I
Sbjct: 152 LDIAAEVVTACINAPDSVLVDILAASIIAGAKACMREVIGRIGLRSECLASALRRAI 208
>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
7a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -3
Query: 602 YSTGNF*ASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 453
YS F C+N+ +++DA T KS + R SS ++ F K+ R D +D
Sbjct: 148 YSLDRFIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 447 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 539
+ +R IC T+ G ++ + + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Frame = +3
Query: 348 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 503
Y+PG + V AV D VEA K D ++++ P Q+ T+ S + KI A
Sbjct: 59 YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118
Query: 504 ALSLIKG 524
+ +L++G
Sbjct: 119 SAALLQG 125
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 769 ALKNIVAVGAGSWMASA 819
ALKNI++VGAGS+ + A
Sbjct: 277 ALKNIISVGAGSYHSFA 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,666
Number of Sequences: 5004
Number of extensions: 53300
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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