Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_E02
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 136 2e-39
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 57 2e-08
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 32 0.69
01_01_0896 + 7060431-7061390,7063562-7064191 31 1.6
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 29 3.7
12_01_0515 + 4081373-4081622,4081725-4081867,4082061-4082219,408... 29 4.9
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 29 4.9
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 29 6.5
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 136 bits (328), Expect(2) = 2e-39
Identities = 62/120 (51%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Frame = +3
Query: 180 AFVGSGNWGSAXAQIVGRNAAXLSNFEXXVTMWVYXXIIE-GKXLTEIINETHENVKYLP 356
A +GSGNWGS ++++ N A L +F V MWV+ I+ GK L+E IN+ +EN KYLP
Sbjct: 11 AVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESINQANENCKYLP 70
Query: 357 GHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIA 536
G KL +NV+A PD+ A KDA++L+FV PHQFV IC L+GK++P +SLIKG +IA
Sbjct: 71 GIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEGISLIKGMEIA 130
Score = 45.2 bits (102), Expect(2) = 2e-39
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 627 EVAEEKFCETTIGCR-DVMLAPLMRDIIQTDYFXXXXXXXXXXXXNMWSVKEHCGSGCGF 803
E+A EKF E TIG + D +A + T YF ++K G
Sbjct: 128 EIAVEKFSEATIGYKKDKEVATRWAKLFTTPYFLVSVVEDIEGVELCGTLKNVVAIAAGL 187
Query: 804 VDGLGYGDNTKAAVIRL 854
VDGL G+NTKAA++R+
Sbjct: 188 VDGLDMGNNTKAAIMRI 204
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 57.2 bits (132), Expect = 2e-08
Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 15/240 (6%)
Frame = +3
Query: 174 KFAFVGSGNWGSAXAQIVGRNAAXLSNFEXXVTMWVYXXIIEGKXLTEIINETHENVKYL 353
K +G G++G+A A V A L V+M ++ + IN +H N KYL
Sbjct: 109 KVVVLGGGSFGTAMAAQVAAKKADLE-----VSM-----LLRDDLVCRSINHSHINCKYL 158
Query: 354 PGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 533
H+LP N+ A +A AD VP QF + + + P +SL KG ++
Sbjct: 159 RDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLEL 218
Query: 534 AEGGGIDLISHIITRCL---KIPCAVLMGANIASE------------VAEEKFCETTIGC 668
+ +S II + L + P VL G + A E V + +
Sbjct: 219 ---NTLRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNKLPTGRNLIVIKLYMAAMVVAS 275
Query: 669 RDVMLAPLMRDIIQTDYFXXXXXXXXXXXXNMWSVKEHCGSGCGFVDGLGYGDNTKAAVI 848
+D LA ++ ++ + ++K G V+G+ G+N AA++
Sbjct: 276 KDKKLAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIVEGMHLGNNCMAALV 335
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.9 bits (69), Expect = 0.69
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 669 DNQWSFRRIFPQQPPMQYWLPL 604
D++W R+F +QPP+++WL +
Sbjct: 93 DSEWVICRVFKKQPPIEHWLEM 114
>01_01_0896 + 7060431-7061390,7063562-7064191
Length = 529
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 687 EPALRPDNQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 574
+PA R D RR P PP + LPL+ H LG L
Sbjct: 29 KPARRDDGDGGMRRRLPPSPP--WGLPLLGHLHLLGAL 64
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 555 LISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQ 710
++SH I + L PCA + A I E+ + C RDV + M I++
Sbjct: 14 MLSHHIQKDLTKPCAKKVTAVIMDEIGDRNLCALIDESRDVSIKEQMGVILR 65
>12_01_0515 +
4081373-4081622,4081725-4081867,4082061-4082219,
4082339-4082518,4082616-4082845,4082959-4083099,
4083366-4083420
Length = 385
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 571 IICDIRSMPPPSAISNPLIKDRAAAVGFIFPSKV 470
++ ++ +PPP + P++ +RA G +FP V
Sbjct: 67 VVALLKPLPPPKTVRYPVLFERAWGFGRLFPCDV 100
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 29.1 bits (62), Expect = 4.9
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 8/161 (4%)
Frame = +3
Query: 387 VPDVVEAAKDADLLIFVVPHQFVRTICSTL--LGKIKPTAAA-LSLIKGFDIAEGGGIDL 557
V ++ EA DAD++I +P R + + K + TA LSL KG + + +
Sbjct: 148 VTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRI 207
Query: 558 IS--HIITRCLKIPCAVLM---GANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYF 722
I+ +I+ +P ++ G NIASE+ +++ I D PL + ++ +F
Sbjct: 208 ITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPHF 266
Query: 723 XXXXXXXXXXXXNMWSVKEHCGSGCGFVDGLGYGDNTKAAV 845
M +K G G V L T +V
Sbjct: 267 IVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSV 307
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 9/162 (5%)
Frame = +3
Query: 387 VPDVVEAAKDADLLIFVVPHQFVRTICSTL----LGKIKPTAAALSLIKGFDIAEGGGID 554
V ++ EA DAD++I +P R + + +I+P +SL KG + +
Sbjct: 145 VTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVI-ISLAKGIEASIDPVPR 203
Query: 555 LIS--HIITRCLKIPCAVLM---GANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDY 719
+I+ +I+ +P ++ G NIASE+ +++ I D PL + ++ +
Sbjct: 204 IITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPH 262
Query: 720 FXXXXXXXXXXXXNMWSVKEHCGSGCGFVDGLGYGDNTKAAV 845
F M +K G G V L T +V
Sbjct: 263 FIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSV 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,705,827
Number of Sequences: 37544
Number of extensions: 376881
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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