Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_E02
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...   313   2e-87
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.5  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score =  313 bits (768), Expect = 2e-87
 Identities = 146/231 (63%), Positives = 176/231 (76%)
 Frame = +3

Query: 162 SQSTKFAFVGSGNWGSAXAQIVGRNAAXLSNFEXXVTMWVYXXIIEGKXLTEIINETHEN 341
           ++  +   VGSGNWGS  A+I+G NAA  SNFE  VTM+VY  II GK LTEIINETHEN
Sbjct: 2   AEKLRICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIINGKKLTEIINETHEN 61

Query: 342 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 521
           VKYLPGHKLP N++A+PDVVEAAKDAD+L FVVPHQF++ ICS L GKIKPTA  LSLIK
Sbjct: 62  VKYLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFGKIKPTAIGLSLIK 121

Query: 522 GFDIAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRD 701
           GFD  +GGGI+LISHII++ L IP +VLMGAN+ASEVA E FCETTIGC+D  +AP+++D
Sbjct: 122 GFDKKQGGGIELISHIISKQLHIPVSVLMGANLASEVANEMFCETTIGCKDKNMAPILKD 181

Query: 702 IIQTDYFXXXXXXXXXXXXNMWSVKEHCGSGCGFVDGLGYGDNTKAAVIRL 854
           +++T YF               ++K     G GF+DGLG GDNTKAAV+RL
Sbjct: 182 LMETSYFKVVVVEDVDSVECCGALKNIVACGAGFIDGLGLGDNTKAAVMRL 232


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 659  HWLSGRNAGSVNAGY 703
            HW SG N G+   GY
Sbjct: 1423 HWKSGHNGGASLTGY 1437


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 659  HWLSGRNAGSVNAGY 703
            HW SG N G+   GY
Sbjct: 1419 HWKSGHNGGASLTGY 1433


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 663 QWSFRRIFPQQPPMQYWLPLI 601
           QW+ R+  P    +++W+PL+
Sbjct: 486 QWTCRQPEPLIELIEHWMPLL 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,181
Number of Sequences: 438
Number of extensions: 3880
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)