Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D22
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    28   2.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.7  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   3.5  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    26   8.1  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 521 WVHAIQYIVPKTSKTFLP*SN 459
           W HA +Y VP+   TFLP +N
Sbjct: 140 WKHASKYSVPELHTTFLPNTN 160


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 555  LLVAAHFSNFNIPFGLV 605
            +L+AAHFS F +P GLV
Sbjct: 1929 ILLAAHFSRFELPPGLV 1945


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 254 GTVTIGSTCTVFFFSTLVPGAEKFLAELIDLKHHGRSSFGCGI 382
           G +TIG        STL     KFL+ + DL   G + FG GI
Sbjct: 50  GLMTIGDNSPQVL-STLTRDYGKFLSAMHDLPVRGNAKFGDGI 91


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 90  TSLTRTHYYDRQTPNQNLK 34
           TS TR H YD+ +P +N K
Sbjct: 124 TSFTRVHDYDKNSPIENEK 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,456,016
Number of Sequences: 5004
Number of extensions: 74605
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)