Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D22
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1272 + 27475302-27475491,27476792-27476876,27477076-274771...    31   1.6  
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435...    30   2.8  
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473...    29   3.7  
05_05_0380 - 24524692-24525192,24525753-24525846,24527818-24527840     29   6.5  

>12_02_1272 +
           27475302-27475491,27476792-27476876,27477076-27477196,
           27477443-27477586
          Length = 179

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 450 PKLGRGLHGRNSHPSHRELLRRKMPQPNELLPWCFRSINSARNFSAPGTRVEKKKTVQVL 271
           P+LG  +     HP     L +   Q +E+      +I+ A +F   GTRV +K   Q +
Sbjct: 93  PRLGEQMKYCMDHPEEVSKLAKVKAQVSEVKGIMMENIDKAADFRQQGTRVRRKMWYQNM 152

Query: 270 PI 265
            I
Sbjct: 153 KI 154


>03_06_0060 +
           31341233-31342009,31342752-31342871,31343401-31343517,
           31343615-31343704,31344279-31344386,31345124-31345306
          Length = 464

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 353 HGRSSFGCGIFLRNNSRWLGC 415
           HGRSS G G+  +   RWLGC
Sbjct: 201 HGRSSSGYGLDSQVKRRWLGC 221


>12_02_0626 -
           21344530-21344986,21346132-21346469,21347300-21347338,
           21347572-21347629,21349854-21350136,21350404-21350766,
           21350768-21350840
          Length = 536

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 579 Y*NGQLQVVSTAHKVTADDLGTRHSVHCS*NEQD-VSSMIEHPIPKLGR-GLHGRN 418
           Y NG +  + T  ++T+ DL +  ++HC   EQD +   ++  + KL R G++  N
Sbjct: 450 YMNGTITSLITRKRITSWDLISGFALHCWSREQDGIGGYLQTELDKLRRIGIYAAN 505


>05_05_0380 - 24524692-24525192,24525753-24525846,24527818-24527840
          Length = 205

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 305 VPGAEKFLAELIDLKH-HGRSSFGCGIFLRNNSRW 406
           VP    F A++ D+   HG S +G G F  + SRW
Sbjct: 142 VPVGYTFGAKMFDMAAVHGGSPYGAGTFAGDGSRW 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,646,371
Number of Sequences: 37544
Number of extensions: 451890
Number of successful extensions: 956
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)