Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D22
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    25   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   2.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   8.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 311 GAEKFLAELIDLKHHGRSSFGCGIFLRNNSRWLGCEF 421
           GA  F A++I L H G+ S G    L  ++  + C+F
Sbjct: 336 GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 372


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 311 GAEKFLAELIDLKHHGRSSFGCGIFLRNNSRWLGCEF 421
           GA  F A++I L H G+ S G    L  ++  + C+F
Sbjct: 47  GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 83


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 311 GAEKFLAELIDLKHHGRSSFGCGIFLRNNSRWLGCEF 421
           GA  F A++I L H G+ S G    L  ++  + C+F
Sbjct: 336 GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 372


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 260 QYLSEEANLYTSLKHFERYLKG 195
           QY ++  N YTS +H   +L+G
Sbjct: 114 QYKNQNNNHYTSHQHLRTHLRG 135


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 202 KYLSKCLRLVYKFASSERYC 261
           +YL+ C  L+Y  A S+R C
Sbjct: 1   RYLAICNPLLYSVAMSQRLC 20


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 208 LSKCLRLVYKFASSERYCYYWQYLHSFFFFYP 303
           LS    +VY +A ++     W+  H+FF+F P
Sbjct: 194 LSGYALVVYSWAKNDS----WRITHNFFYFDP 221


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 202 KYLSKCLRLVYKFASSERYC 261
           ++L+ C  L+Y  A S+R C
Sbjct: 2   RFLAICNPLLYSVAMSQRLC 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,533
Number of Sequences: 438
Number of extensions: 5452
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)