Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D20
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    31   0.22 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.28 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   8.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   8.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   8.1  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 349 TRSLTSSLTEVKHTKTPDPTMMSLKNAVTPGDVMGLVQSNLPQM 480
           T+S T   T+     T  P  +S KN+ T  ++ G+ +SN+P +
Sbjct: 502 TKSTTPKSTDTPTEATTSPVKVSTKNSNTTENLNGINESNMPML 545


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 283  LLLKSVWRNALRNTPICQTR-RHTRSLTSSLTEVKHTKTPDPTMMSLKNA 429
            LLL+S W N + N  I +T+ + T+   S   +V ++K   P  M L  A
Sbjct: 2321 LLLRSSWENVISNVSILRTKFQTTKHKRSPFCQVTYSKVDIPWSMELHAA 2370


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 276 DGIIIEERLE-KCTTQHSNLPNKTTH*KSNVELN*--SETYKDTRSHNDEFEECCNSW*C 446
           D ++  E+L  +  +  SN  +K +  +S++  N    + Y +  SHNDEF    NS  C
Sbjct: 159 DSVVSSEKLYIRIASILSNANDKVSFKESSINTNTVFKDVYVEVSSHNDEF-LLKNSSKC 217

Query: 447 YGLSSV 464
           +  +S+
Sbjct: 218 WAFTSL 223


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 307 NALRNTPICQTRRHTRSLTSSLTEVKHTKTPDPTMMSLKNAVTPGDVMGLVQSN 468
           N L NT    T +   S TSS +  K   TPD    SL  ++T  + + LV +N
Sbjct: 19  NVLPNT----TTKRKASTTSSKSRAKKASTPDLRQTSL-TSMTASEQIPLVTNN 67


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 598 NADRVIQMLDP**PLQSFQYCCSSVIERDFLMPAAYADQS 479
           N D  I++L+   PL++F +CCS         P +Y  +S
Sbjct: 421 NLDSDIKLLNTLSPLETFFWCCSFPSTASTSSPFSYYPES 460


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 446 TSPGVTAFFKLIIVGSGVFVCFTSVKLDVRLLVC 345
           T P  T   ++I+   G F+ +   K  +  LVC
Sbjct: 75  TKPSYTELRQMIVSNGGTFIQYVDGKTSISYLVC 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,948
Number of Sequences: 5004
Number of extensions: 54739
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)