Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D20
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068719-3|AAM45352.1|  603|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF068719-2|AAC17783.1|  633|Caenorhabditis elegans Hypothetical ...    28   7.6  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    28   7.6  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    28   7.6  

>AF068719-3|AAM45352.1|  603|Caenorhabditis elegans Hypothetical
           protein H14N18.4b protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 319 NTPICQTRRHTRSLTSSLTEVKHTKTPDPTMMSLKNAVTPGDVMG 453
           +T +CQT     +  ++ TE      P  ++M  K+  TP ++ G
Sbjct: 131 STGMCQTINARETAPAAATETMFVDNPKESVMGYKSIATPSELHG 175


>AF068719-2|AAC17783.1|  633|Caenorhabditis elegans Hypothetical
           protein H14N18.4a protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 319 NTPICQTRRHTRSLTSSLTEVKHTKTPDPTMMSLKNAVTPGDVMG 453
           +T +CQT     +  ++ TE      P  ++M  K+  TP ++ G
Sbjct: 161 STGMCQTINARETAPAAATETMFVDNPKESVMGYKSIATPSELHG 205


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 440 PGVTAFFKLIIVGSGVFVCFTSVKLDVRLLVCRLVWQIGVLRSAFLQT--LFNNNAITTL 267
           PG+ AF+ +  V + V   F  VK ++   VC  V  + V    F  T     N A+ T+
Sbjct: 338 PGLQAFYNIFHVMNNVLRLFQKVKKEMWHFVCGYVKILEVRLKPFEDTPCFITNTALETI 397

Query: 266 GEKF*DY 246
            ++  +Y
Sbjct: 398 IQELCEY 404


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 440 PGVTAFFKLIIVGSGVFVCFTSVKLDVRLLVCRLVWQIGVLRSAFLQT--LFNNNAITTL 267
           PG+ AF+ +  V + V   F  VK ++   VC  V  + V    F  T     N A+ T+
Sbjct: 372 PGLQAFYNIFHVMNNVLRLFQKVKKEMWHFVCGYVKILEVRLKPFEDTPCFITNTALETI 431

Query: 266 GEKF*DY 246
            ++  +Y
Sbjct: 432 IQELCEY 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,849
Number of Sequences: 27780
Number of extensions: 293190
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)