Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D20
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +1

Query: 403 PTMMSLKNAVTPGDVMGL----VQSNLPQMTDQHMLQALRSLFQLQKNSNIENSE 555
           P  +++K  +  G    +    + S LP+         +RS F+L +N  + N +
Sbjct: 508 PAFLTIKEWIERGTTKSMEAANIMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQ 562


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 NVVMALLLKSVWRNALRNTPICQTR 342
           N ++  L+   +RNA + T  C+TR
Sbjct: 324 NPILYNLMSIKYRNAFKQTICCKTR 348


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 484 DQHMLQALRSLFQLQKNSN 540
           D H++ A ++L Q  KN+N
Sbjct: 131 DNHLVNAFKTLTQEPKNTN 149


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 99  CSYISVYYKNNKNKLKSWYIYN 164
           C+Y + YY NN  K K +Y  N
Sbjct: 311 CNYSNNYYNNNNYK-KLYYNIN 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,050
Number of Sequences: 438
Number of extensions: 3603
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)