Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D16
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   2.7  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   4.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   8.3  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +2

Query: 128  YNTYVGIQLKFSFSNKNSVRMSFWNPSTKNEEDL 229
            Y++Y+   + +SF NK  + ++F +PS  +++ +
Sbjct: 1082 YSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGI 1115


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 423 YSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATN 548
           +  L+ DV   D  K L+ W  S+++   T   ++L  KAT+
Sbjct: 200 FPNLLADVGFCDSFKPLWSWHNSKSEVKKTRKSKKLSKKATS 241


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 396 YILHKYTQTYSTLVQDVRSVDLDKVLFEWFKSETQNGNTINEEQLQSKATNLE 554
           Y+L  YT T   L   +  VD+D+ L   F    +N + +    + S+ T+LE
Sbjct: 355 YVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLEN-DQVPPRLIASECTSLE 406


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 390 KEYILHKYTQTYSTLVQDVRSVDLDKVLFEWFKS 491
           K ++     + YS L  ++  VDLD + F WF S
Sbjct: 640 KSFVKESLPEIYSHL--ELLGVDLDAISFHWFLS 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,711
Number of Sequences: 5004
Number of extensions: 51072
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)