Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D16
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               24   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.5  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 220 RRSISINAYLSQERI*KNRSFDKVTNN*RFXI 315
           R++ISI+  +  E I  N+S DK  N   F I
Sbjct: 105 RKNISIDVKMLSECINANKSTDKCENGLNFII 136


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 463 SRSTERTSCTSVLYVCVYLC 404
           SRSTER    SV  +C  LC
Sbjct: 278 SRSTERMIAASVNLICHILC 297


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 602 DPLTVWLSVLKHH 564
           D L+ WL + KHH
Sbjct: 117 DSLSCWLQMTKHH 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,861
Number of Sequences: 438
Number of extensions: 3464
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)