Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_D14
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 270 2e-73
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 262 6e-71
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 131 1e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 118 1e-27
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.017
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 0.86
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.5
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 27 4.6
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 26 6.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 8.1
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 8.1
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 270 bits (662), Expect = 2e-73
Identities = 129/229 (56%), Positives = 159/229 (69%), Gaps = 2/229 (0%)
Frame = +1
Query: 148 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 327
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 328 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 507
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 508 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPRLRFHCR 687
+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YP +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQ--VS 178
Query: 688 RRALQLYXXXXXXXXAL*L--CFHGSTMKPSMTSAAXNLDIERPTYTNL 828
++ Y L L C + NLDIERP+Y NL
Sbjct: 179 TSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENL 227
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +2
Query: 677 STAVVEPYNSILTTHTXLEHSDCAFM 754
ST+VVEPYNS+LTTH L+ +DC FM
Sbjct: 178 STSVVEPYNSVLTTHATLDLADCTFM 203
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +3
Query: 756 VDNEAIYDICRR 791
VDNE+ YDICRR
Sbjct: 204 VDNESCYDICRR 215
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 262 bits (641), Expect = 6e-71
Identities = 130/234 (55%), Positives = 160/234 (68%), Gaps = 7/234 (2%)
Frame = +1
Query: 148 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 312
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 313 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 492
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 493 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPRL 672
D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YP
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP 179
Query: 673 RFHCRRRALQLYXXXXXXXXAL*L--CFHGSTMKPSMTSAAXNLDIERPTYTNL 828
+ ++ Y L C + NLDIERPTY NL
Sbjct: 180 Q--VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENL 231
Score = 47.6 bits (108), Expect = 2e-06
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +2
Query: 677 STAVVEPYNSILTTHTXLEHSDCAFM 754
ST+VVEPYNS+LTTH L++SDC FM
Sbjct: 182 STSVVEPYNSVLTTHATLDNSDCTFM 207
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +3
Query: 756 VDNEAIYDICRR 791
VDNEA YDICRR
Sbjct: 208 VDNEACYDICRR 219
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 131 bits (316), Expect = 1e-31
Identities = 64/173 (36%), Positives = 93/173 (53%)
Frame = +1
Query: 148 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 327
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 328 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 507
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 508 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 666
+R+ A+ C LQGF + H LL+ ++ +Y + F++ P
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAP 171
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 677 STAVVEPYNSILTTHTXLEHSDCAF 751
S VVEPYN+ L+ H +E+SD F
Sbjct: 176 SDTVVEPYNATLSMHQLVENSDETF 200
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 118 bits (283), Expect = 1e-27
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 2/174 (1%)
Frame = +1
Query: 151 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 330
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 331 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 504
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 505 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP 666
D I + AD L+GF + H L+ERL+ Y KK ++++P
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 34.7 bits (76), Expect = 0.017
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 512 SASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WSVSPLT-TARSLNWSSPSTRASGSTAV 688
S++ +S P+ S S T S +P G+ S +P+T T + S+P T + +T+
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSIPPTGN-----STTPVTPTVPPTSSSTPLTTTNCTTST 431
Query: 689 VEPYNSILTTHTXLEHSDC 745
PY S T T L ++C
Sbjct: 432 SVPYTSTPVTSTPLATTNC 450
Score = 29.5 bits (63), Expect = 0.65
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRASGSTA 685
T + ++ TSVP +STP S ++ +P+T S+P T + +T+
Sbjct: 424 TTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVT-------STPLTTTNCTTS 476
Query: 686 VVEPYNSILTTHTXLEHSDC 745
PY S T T L ++C
Sbjct: 477 TSIPYTSTPVTSTPLTTTNC 496
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 29.1 bits (62), Expect = 0.86
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 611 SVSPLTTARSLNWSSPSTRASGSTAVVEPYNSILTTHTXLEHSDCAF 751
S SP+ SLN + S +S S A VE + IL ++ +E ++ AF
Sbjct: 252 SSSPMMRRSSLNSNRRSVESSSSAAFVEGQSFILDSNGAIEVANSAF 298
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS-- 673
T S TS P+ S SSTP L S +P+T++ +LN S+P T +S
Sbjct: 937 TSSTGLNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSSVL 990
Query: 674 -GSTAVVEPYNSILTTHTXLEHS 739
ST + +S+L T T + S
Sbjct: 991 NSSTPITS--SSVLNTSTPITSS 1011
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS-- 673
T S + TS P+ S SSTP L S +P+T++ +LN S+P T +S
Sbjct: 1873 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSSVL 1926
Query: 674 -GSTAVVEPYNSILTTHTXLEHS 739
ST + +S+L + T + S
Sbjct: 1927 NSSTPITS--SSVLNSSTPITSS 1947
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS-- 673
T S + TS P+ S SSTP L S +P+T++ +LN S+P T +S
Sbjct: 2065 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSS------TPITSSTALNTSTPITSSSVL 2118
Query: 674 -GSTAVVEPYNSILTTHTXLEHS 739
ST + +S+L + T + S
Sbjct: 2119 NSSTPITS--SSVLNSSTPITSS 2139
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS-- 673
T S + TS P+ + SSTP L S +P+T++ +LN S+P T +S
Sbjct: 3037 TSSTALNTSTPITSSTVLNSSTPITSSSVLNSS------TPITSSTALNTSTPITSSSVL 3090
Query: 674 -GSTAVVEPYNSILTTHTXLEHS 739
STA+ +SI+ + T + S
Sbjct: 3091 NSSTAITS--SSIVNSSTPITSS 3111
Score = 26.6 bits (56), Expect = 4.6
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRASG- 676
T S TS P+ + SSTP AL + +P+T++ LN S+P T ++G
Sbjct: 889 TSSTVVNTSTPITSSTVVNSSTPITSSTALNTS------TPITSSSVLNSSTPITSSTGL 942
Query: 677 STAVVEPYNSILTTHTXLEHS 739
+T+ +S+L + T + S
Sbjct: 943 NTSTPITSSSVLNSSTPITSS 963
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRAS 673
T S + TS P+ S SSTP L S +P+T++ +LN S+P T +S
Sbjct: 625 TSSTALNTSTPITSSSVLNSSTPITSSSVLNSS------TPITSSTALNTSTPITSSS 676
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 611 SVSPLTTARSLNWSSPSTRAS---GSTAVVEPYNSILTTHTXLEHS 739
S +P+T++ +LN S+P T +S STA+ +S+L + T + S
Sbjct: 3200 SSTPITSSTTLNTSTPITSSSVLNSSTAITS--SSVLNSSTPITSS 3243
Score = 25.8 bits (54), Expect = 8.1
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSP---STRA 670
T S + TS P+ S SSTP + S +P+T++ +LN S+P ST
Sbjct: 3385 TSSTALNTSTPITSSSVLNSSTPITSSTVVNSS------TPITSSTALNTSTPITSSTVV 3438
Query: 671 SGSTAVVEPYNSILTTHTXLEHS 739
+ ST + +S+L + T + S
Sbjct: 3439 NSSTPITS--SSVLNSSTAIASS 3459
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +2
Query: 506 TESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTRASGSTA 685
T S+ S +S S SS PS + ++ +S +T S + SS S+ STA
Sbjct: 214 TSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTA 273
Query: 686 VVEPYNSILTTHTXL 730
+ S + HT L
Sbjct: 274 ALALNASKASNHTSL 288
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 620 PLTTARSLNWSSPSTRASGSTAVVEPYNS 706
P T+ RS N SPS+ +S STA + + S
Sbjct: 424 PATSTRSFNDISPSSSSSYSTAQISTFPS 452
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 680 TAVVEPYNSILTTHTXLEHSDCAFMGRQ*SHL*HLPPXISTLSAQPTPT*NRLIGTD 850
T +V YN +T + LEH + A G S L P ++T ++ P N L+ D
Sbjct: 812 TEIVRQYNENVTLYAPLEHINVAIRGG--SVLPMQQPSLTTYESRQNPF-NLLVALD 865
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 227 STASSLMARCPQTRPSGVETILSTLSSARPELAST 331
ST SSL + ++PS T ST SSA P S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 246 WPDAHRQDHRGWRRFFQHFLQR 311
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 21 TIGNSLRFFDSHSFGKPL 74
T GN LRF++ H+ GK L
Sbjct: 137 TAGNKLRFYEIHADGKKL 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,529,082
Number of Sequences: 5004
Number of extensions: 72825
Number of successful extensions: 274
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -