Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D07
         (991 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.7  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   6.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.4  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
 Frame = +2

Query: 851 PPPXXPXPXPPPXPXXXXXGPPPPXXXPXXPPP--PPXPXXP 970
           P    P P  PP        PP P   P   PP  PP    P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
 Frame = +3

Query: 498 PXXPPXXPXXGXXXPXPXPPPXXXPP--PP 581
           P  PP         P P  PP   PP  PP
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 841 PPXPPPXXPXPXPPPPP 891
           PP      P   PPPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 960 GXGGGGGXXGXXXGGGG 910
           G G GGG  G    GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.152    0.568 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,433
Number of Sequences: 336
Number of extensions: 4670
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28133776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)