Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D06
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +1

Query: 457 PPPPXGXGXFFXGPXPXPPXKNPXPXXXGGGGXXXPP 567
           PPPP   G    GP P PP   P P    GG     P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 494 PXKKXPXPXGGGGFXXXXKXPPPPPXXXKKKK 399
           P    P P    GF    + PPPPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 494 PXKKXPXPXGGGGFXXXXKXPPPPPXXXKKKK 399
           P    P P   G        PPPPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 566 GGXXXPPPPXXXGXGFFXGGXGXGPXKKXPXPXGGG 459
           GG    PPP   G G F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,793
Number of Sequences: 5004
Number of extensions: 15383
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)