Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D04
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   2.7  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   2.7  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   3.6  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   6.3  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 272 GSVQLVRASRKKVCPGTPTSSRPVPGSL--LDDAIDLNLIQFFSSFN 138
           G V  ++ +++   P TPT++ P+P S+   D+A++ +   +F   +
Sbjct: 285 GKVDTLKVTKEDEDPTTPTNAIPIPSSMSKRDEALENDKDNYFDDLH 331


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 544 KNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLF--GDEVSPLLSQYIREKEDV 717
           KN     DKY + L++   ++     E +  +W   +SLF    E S +L   +  KE V
Sbjct: 46  KNYEEAVDKYGQALMQSESIHGSESLENRNVLWLYGKSLFQIAIENSQVLGNALGAKESV 105


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 529 IMGILKNIPHIDDKYLRVLVRDRELYNDTDTEVKRQI 639
           ++   K+I  +DD    VL +  EL+ DTD   +RQ+
Sbjct: 437 VISFRKSILSVDDTVANVL-KSNELFRDTDQYTQRQM 472


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 685 GVEKLHLQTVTGCLAIFDAS 626
           G +  H     GCLA+FDAS
Sbjct: 412 GYDSFHTSNNRGCLALFDAS 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,026
Number of Sequences: 5004
Number of extensions: 53139
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)