Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_D04
(897 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX255925-4|CAM24149.1| 580|Homo sapiens cofactor of BRCA1 (COBR... 159 2e-38
AF464935-1|AAL69965.1| 580|Homo sapiens cofactor of BRCA1 protein. 159 2e-38
BC011892-1|AAH11892.1| 475|Homo sapiens COBRA1 protein protein. 97 6e-20
AK022651-1|BAB14157.1| 475|Homo sapiens protein ( Homo sapiens ... 96 2e-19
>BX255925-4|CAM24149.1| 580|Homo sapiens cofactor of BRCA1 (COBRA1)
protein.
Length = 580
Score = 159 bits (385), Expect = 2e-38
Identities = 81/187 (43%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
Frame = +1
Query: 205 GLEEVGVPGQTFLRDALTSCTDPLKAIEEFQLENGIXXXXXXXXXXXXXXHGVRRLDFHT 384
GL+++GV L++ LT+CT+PLKAIE+FQ ENG+ HG RL+FH
Sbjct: 4 GLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQ 63
Query: 385 SVLEELREKLIAHIXXXXXXXXXXXXXXXXXXXXXX-FPVVRVKALRPVIMGILKNIPHI 561
SV +ELR+KL+ + F +V++ +L+PV+M ++K++P +
Sbjct: 64 SVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKV 123
Query: 562 DDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFDHE--N 735
+K L++++ D+ELY EVKRQIWQDNQ+LFGDEVSPLL QYI EKE LF E
Sbjct: 124 PEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSV 183
Query: 736 LTNLFFP 756
L N F P
Sbjct: 184 LHNFFSP 190
Score = 56.4 bits (130), Expect = 1e-07
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3
Query: 762 PKVRRQGAVVQKLAHMIGTSVKLYDMXLQFXXXXXXXXXNVHYXT 896
PK RRQG VVQ+L M+G +VKLYDM LQF NVHY T
Sbjct: 192 PKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCT 236
>AF464935-1|AAL69965.1| 580|Homo sapiens cofactor of BRCA1 protein.
Length = 580
Score = 159 bits (385), Expect = 2e-38
Identities = 81/187 (43%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
Frame = +1
Query: 205 GLEEVGVPGQTFLRDALTSCTDPLKAIEEFQLENGIXXXXXXXXXXXXXXHGVRRLDFHT 384
GL+++GV L++ LT+CT+PLKAIE+FQ ENG+ HG RL+FH
Sbjct: 4 GLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQ 63
Query: 385 SVLEELREKLIAHIXXXXXXXXXXXXXXXXXXXXXX-FPVVRVKALRPVIMGILKNIPHI 561
SV +ELR+KL+ + F +V++ +L+PV+M ++K++P +
Sbjct: 64 SVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKV 123
Query: 562 DDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFDHE--N 735
+K L++++ D+ELY EVKRQIWQDNQ+LFGDEVSPLL QYI EKE LF E
Sbjct: 124 PEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSV 183
Query: 736 LTNLFFP 756
L N F P
Sbjct: 184 LHNFFSP 190
Score = 56.4 bits (130), Expect = 1e-07
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3
Query: 762 PKVRRQGAVVQKLAHMIGTSVKLYDMXLQFXXXXXXXXXNVHYXT 896
PK RRQG VVQ+L M+G +VKLYDM LQF NVHY T
Sbjct: 192 PKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCT 236
>BC011892-1|AAH11892.1| 475|Homo sapiens COBRA1 protein protein.
Length = 475
Score = 97.5 bits (232), Expect = 6e-20
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Frame = +1
Query: 514 ALRPVIMGILKNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQ 693
+L+PV+M ++K++P + +K L++++ D+ELY EVKRQIWQDNQ+LFGDEVSPLL Q
Sbjct: 3 SLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQ 62
Query: 694 YIREKEDVLFDHE--NLTNLFFP 756
YI EKE LF E L N F P
Sbjct: 63 YILEKESALFSTELSVLHNFFSP 85
Score = 56.4 bits (130), Expect = 1e-07
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3
Query: 762 PKVRRQGAVVQKLAHMIGTSVKLYDMXLQFXXXXXXXXXNVHYXT 896
PK RRQG VVQ+L M+G +VKLYDM LQF NVHY T
Sbjct: 87 PKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCT 131
>AK022651-1|BAB14157.1| 475|Homo sapiens protein ( Homo sapiens
cDNA FLJ12589 fis, clone NT2RM4001258. ).
Length = 475
Score = 95.9 bits (228), Expect = 2e-19
Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Frame = +1
Query: 514 ALRPVIMGILKNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQ 693
+L+PV+M ++K++P + +K L++++ D+ELY EVKRQIWQDNQ+ FGDEVSPLL Q
Sbjct: 3 SLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQDNQAFFGDEVSPLLKQ 62
Query: 694 YIREKEDVLFDHE--NLTNLFFP 756
YI EKE LF E L N F P
Sbjct: 63 YILEKESALFSTELSVLHNFFSP 85
Score = 56.4 bits (130), Expect = 1e-07
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = +3
Query: 762 PKVRRQGAVVQKLAHMIGTSVKLYDMXLQFXXXXXXXXXNVHYXT 896
PK RRQG VVQ+L M+G +VKLYDM LQF NVHY T
Sbjct: 87 PKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRTRNVHYCT 131
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,705,876
Number of Sequences: 237096
Number of extensions: 1782969
Number of successful extensions: 3151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3140
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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