Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D04
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    32   0.48 
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    32   0.48 
AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    30   2.0  
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical pr...    29   3.4  
M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.     28   7.9  
AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut ...    28   7.9  

>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = +1

Query: 556 HIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPL---LSQYIREKEDVLFD 726
           H+D+ + +V   +   +N+   +   ++ Q+N+ L   E+S L   LS +  + + + F 
Sbjct: 202 HLDEVHRKVTSEEFSPFNEPRVKRLWKLAQENEKLTPHELSVLKDELSHFESQLKKIEFH 261

Query: 727 HENLTNLFFPLHQK*EDKVQLFRNL 801
            E ++ L     ++ +DK Q++ NL
Sbjct: 262 KEEVSRLQEDAEERGKDKSQVYENL 286


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = +1

Query: 556 HIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEVSPL---LSQYIREKEDVLFD 726
           H+D+ + +V   +   +N+   +   ++ Q+N+ L   E+S L   LS +  + + + F 
Sbjct: 202 HLDEVHRKVTSEEFSPFNEPRVKRLWKLAQENEKLTPHELSVLKDELSHFESQLKKIEFH 261

Query: 727 HENLTNLFFPLHQK*EDKVQLFRNL 801
            E ++ L     ++ +DK Q++ NL
Sbjct: 262 KEEVSRLQEDAEERGKDKSQVYENL 286


>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 31/104 (29%), Positives = 47/104 (45%)
 Frame = +1

Query: 496 PVVRVKALRPVIMGILKNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQDNQSLFGDEV 675
           P+     L P I+ ILK  P    +Y   L+R RE   +T T     I +   + F D +
Sbjct: 39  PIGPASDLPPEILDILKENPRATPQYTPPLIRHRE---NTWTPENYPIVRVPSAQFTDVM 95

Query: 676 SPLLSQYIREKEDVLFDHENLTNLFFPLHQK*EDKVQLFRNLPT 807
           + L   +  EK    + H ++T  + PL ++ E K Q    LPT
Sbjct: 96  TELYDYHEVEK----YTHRSVTPDYEPLRKEPELKEQ---KLPT 132


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 595 RELYNDTDTEVKRQIWQDNQSLFGDEVSPLLSQYIREKEDVLFDHE-NLTNLFFPLHQ 765
           +E+ +D+D EVKR +    + L G     L +Q     E  L + E NL +L F  +Q
Sbjct: 200 KEIMDDSDDEVKRILESGEEGLVGKNNRTLKTQQRNHTEVTLEEEEINLEDLQFKSYQ 257


>Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical
           protein T27A8.5 protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 368 GSTFIHQFWRNYVKNSLHTSTSLAIKITRIMTKNSK 475
           GS F  + W N  K+ LH ST L+I    I   N+K
Sbjct: 84  GSPFFSRGWANESKHHLHLSTLLSIDGVHIPGNNNK 119


>M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.
          Length = 562

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 8/35 (22%), Positives = 23/35 (65%)
 Frame = +1

Query: 544 KNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQD 648
           +++P +D++++  ++  + LYN+   E + ++W D
Sbjct: 340 EDMPKVDEEFISEIIGRKLLYNNRYGENREKVWND 374


>AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut
           esterase protein 1 protein.
          Length = 562

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 8/35 (22%), Positives = 23/35 (65%)
 Frame = +1

Query: 544 KNIPHIDDKYLRVLVRDRELYNDTDTEVKRQIWQD 648
           +++P +D++++  ++  + LYN+   E + ++W D
Sbjct: 340 EDMPKVDEEFISEIIGRKLLYNNRYGENREKVWND 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,461,529
Number of Sequences: 27780
Number of extensions: 295990
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)