Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D03
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...   109   5e-25
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.88 
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    28   1.5  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   3.6  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   4.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   6.2  

>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score =  109 bits (262), Expect = 5e-25
 Identities = 53/106 (50%), Positives = 68/106 (64%)
 Frame = +1

Query: 163 MAWRSHGANNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSATIS 342
           M W  + ++N  L+++L  +  + +     AM A  R  YCP SPY DSPQSIG+  TIS
Sbjct: 1   MFWSFNLSSNAALVQHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGYGVTIS 60

Query: 343 APHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRV 480
           APHMHA AL++L+  L PG  ALD+GSGSGYL A MA M+   G V
Sbjct: 61  APHMHATALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGTV 106



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
 Frame = +2

Query: 485 GMERISELVNLATKNIQNDNP------SLLSSERIKLVVGDGRLGYPSEAPYSAIHVGAA 646
           G+E I +LV  + KN+  D         +   +R+++ VGDGR+G   +  + AIHVGA+
Sbjct: 108 GIEHIPQLVETSKKNLLKDINHDEVLMEMYKEKRLQINVGDGRMGTSEDEKFDAIHVGAS 167

Query: 647 APTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDGTTTVKKLMSVIYVPLTD 817
           A  LPQ L+DQLK  G++++P+G     Q++  ++K + G  + + L  V YVPLTD
Sbjct: 168 ASELPQKLVDQLKSPGKILIPIGTY--SQNIYLIEKNEQGKISKRTLFPVRYVPLTD 222


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 806 EHKSHSSISLQLLFHPVLYQPESNVVHHPQALQELLASLPVS 681
           E+ SH+  +LQ    P+   PE + VH P+A +  +  LP S
Sbjct: 76  EYNSHNKHALQNSQLPLPKTPEKSTVHRPKANKVEVTDLPSS 117


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -1

Query: 527 FWLPNSQVLIYVPFQLTLPVSPNIMAIQAVR*PDPEPTSKAFSPGTNWFFNFSNACACMW 348
           F LPN+   ++    LT PV+PN   +Q       +P      P T +   F+N  + + 
Sbjct: 332 FSLPNNSQPVFGHTSLTQPVNPNGFTVQPPATFMQQPQGPFVPPNTTFESPFANVTSKIS 391

Query: 347 GALIVAENP 321
            +    +NP
Sbjct: 392 ASGFSNDNP 400


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +1

Query: 313 QSIGFSATISAPHMHAHALEKLKNQLVPGEKALD---VGSGSGYLTACMAMMLGETGRVS 483
           QS G S  I A  +H   +    N    G + +    +G   G  T+C+A+M G+T +V 
Sbjct: 17  QSKGASFKIGAS-LHGSRMTARWNSNASGNEKVKGPVIGIDLGTTTSCLAIMEGQTPKVI 75

Query: 484 WNGTYIRT 507
            N    RT
Sbjct: 76  ANAEGTRT 83


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 770 LFHPVLYQPESNVVHHPQALQELLA--SLPVSIDQLELVVKWELQ 642
           L  P+  +P S  V +P   + + +   LP+ ++Q   VV+WE +
Sbjct: 303 LDEPIAIRPTSETVMYPYYAKWIRSHRDLPLKLNQWNSVVRWEFK 347


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 790  HQFLYSCCSILCFINLSQMLFTTLRPYRN 704
            H   +SCCS++   NL   L   L+ Y N
Sbjct: 1780 HTLYFSCCSMIAKENLDDQLRELLKNYFN 1808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,712,241
Number of Sequences: 5004
Number of extensions: 80152
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)