Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_D03
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517... 116 2e-26
08_02_1558 + 27870327-27870332,27870890-27871163,27871438-278715... 111 9e-25
05_01_0268 - 2053420-2053539,2053636-2053710,2053805-2053867,205... 33 0.40
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 31 1.2
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 31 1.2
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193 29 5.0
11_08_0088 + 28283124-28283330,28285639-28286322 29 5.0
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 29 5.0
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231... 29 5.0
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 28 8.7
09_06_0083 + 20753191-20754480 28 8.7
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 28 8.7
07_01_0026 + 190568-190829,192475-194534,194620-195168 28 8.7
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 28 8.7
01_06_0964 + 33446750-33447868 28 8.7
>04_04_0268 -
24050721-24050971,24051112-24051276,24051479-24051749,
24052344-24052517
Length = 286
Score = 116 bits (280), Expect = 2e-26
Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Frame = +2
Query: 482 VGMERISELVNLATKNIQNDNPS-LLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTL 658
VG+E I ELV +T+N+Q + LL + V DGRLG+P +APY AIHVGAAAP +
Sbjct: 168 VGIEHIPELVAASTENVQRSAAAQLLKDGSLSFHVADGRLGWPDDAPYDAIHVGAAAPEI 227
Query: 659 PQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDGTTTVKKLMSVIYVPLTDKEHQ 829
PQ L+DQLK GGR+++PVG Q L VDK DG+ TV+ SV YVPLT + Q
Sbjct: 228 PQPLVDQLKTGGRMVIPVG--SYFQELQVVDKNADGSVTVQNDASVRYVPLTSRSAQ 282
Score = 109 bits (262), Expect = 3e-24
Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Frame = +1
Query: 190 NVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPS--SPYQDSPQSIGFSATISAPHMHAH 363
N L+ L+ G +++D VA M ++DR + +PY DSP IG++ATISAPHMHA
Sbjct: 69 NKALVEYLKQYGAVRTDKVAEVMESIDRALFVAEGLTPYTDSPMPIGYNATISAPHMHAT 128
Query: 364 ALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGR 477
LE LK+ L PG ALDVGSGSGYLTAC AMM+G GR
Sbjct: 129 CLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGR 166
>08_02_1558 +
27870327-27870332,27870890-27871163,27871438-27871515,
27871753-27871917,27872353-27872603
Length = 257
Score = 111 bits (266), Expect = 9e-25
Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +2
Query: 482 VGMERISELVNLATKNIQNDNPS-LLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTL 658
VG+E I ELV + +NI+ + L+ + + + DGR G+P APY AIHVGAAAP +
Sbjct: 139 VGVEHIPELVTSSIENIKKSAAAPQLTDGSLSIHITDGREGWPELAPYDAIHVGAAAPQI 198
Query: 659 PQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDGTTTVKKLMSVIYVPLTDKEHQ 829
PQALI+QLKPGGR+++PVG Q L VDK QDG +++ +V YVPLT K+ Q
Sbjct: 199 PQALIEQLKPGGRMVIPVGTM--FQELKVVDKNQDGKVSIRDETAVRYVPLTSKDAQ 253
Score = 88.2 bits (209), Expect = 8e-18
Identities = 57/132 (43%), Positives = 72/132 (54%), Gaps = 29/132 (21%)
Frame = +1
Query: 169 WRSHGAN-NVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCP--SSPYQDSPQSIGFSATI 339
W S ++ N ++ L+ GIIKS VA M +DR + P +SPY DSP IG++ATI
Sbjct: 6 WSSGASDKNKAMVEQLQRYGIIKSSKVAQVMETIDRGLFVPPGASPYFDSPMPIGYNATI 65
Query: 340 SAPHMHAHALEKLKNQLVPGEKALDVGS--------------------------GSGYLT 441
SAPHMHA LE L+ L PG +ALDVGS G+GYLT
Sbjct: 66 SAPHMHASCLELLEKHLQPGMRALDVGSGFEMQKCLPTYVEKTIFSFISQLFREGTGYLT 125
Query: 442 ACMAMMLGETGR 477
AC A+M+G GR
Sbjct: 126 ACFAIMVGPEGR 137
>05_01_0268 -
2053420-2053539,2053636-2053710,2053805-2053867,
2053977-2054093,2054332-2054436,2054559-2054768,
2054858-2054983,2055061-2055114,2055198-2055278,
2055419-2055526,2055579-2055719,2056396-2056629
Length = 477
Score = 32.7 bits (71), Expect = 0.40
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 169 WRSHGANNVDLIRNLRTNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSATISA 345
W SH A N+ L R L N + + D +K+Y P PY D + + F A + A
Sbjct: 259 WLSHSAQNL-LRRILEPNPMKRIDMAGIKSHEWFQKDYIPVLPYDDDDEDVQFGARLPA 316
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 385 QLVPGEKALDVGSGSGYLTACMAMMLGETGRV 480
+LVPG L+ G+GSG LT +A + GRV
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRV 151
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 385 QLVPGEKALDVGSGSGYLTACMAMMLGETGRV 480
+LVPG L+ G+GSG LT +A + GRV
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRV 151
>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
Length = 353
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 412 DVGSGSGYLTACMAMMLGETGRV 480
D+G+GSG + +A MLG GRV
Sbjct: 183 DLGTGSGAIAVAVARMLGPEGRV 205
>11_08_0088 + 28283124-28283330,28285639-28286322
Length = 296
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 319 IGFSATISAPHMHAHALEK-LKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVSWNGT 495
IG + S HM + L + +QL+ G +A+DV G LT+ L E G ++ +
Sbjct: 152 IGTAQLESREHMMTYGLSSGISSQLL-GSQAIDVVDVVGCLTSPRGTQLHE-GHLAHLMS 209
Query: 496 YIRTCEFGNQKHP 534
YIR C Q P
Sbjct: 210 YIRACRDLEQHTP 222
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 623 SAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEG 724
+++ +G+AAP P A I + PG + P+GP+G
Sbjct: 500 ASVPIGSAAPLGPVAPIGPVSPGP--VAPLGPDG 531
>06_03_0021 +
15520342-15520443,15522217-15522867,15522980-15523186,
15523698-15523913,15523992-15524214,15525052-15525299,
15525385-15525563,15525803-15526056,15526237-15526388
Length = 743
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +1
Query: 217 TNGIIKSDTVANAMLAVDRKNYCPSSPYQDSPQSIGFSATISAPHMHAHALEK------- 375
+N I +++ V+ K YC + DS SI + + + P L+K
Sbjct: 421 SNTISPENSMVQTNQDVNTKEYCSTQRTSDS--SIIWRSPVDFPDARPETLQKTKSVLHK 478
Query: 376 LKNQLVPGEKALDVGSGSG 432
LK Q+V G + G+G+G
Sbjct: 479 LKQQIVEGTPVIGAGAGTG 497
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 576 SLILSDESKLGLSFWMFL-VAKFTSSDIRSIPTNPASF 466
+L+ S++ KL + ++L V S D+R PT+PASF
Sbjct: 128 ALVFSEDQKLDWADMLYLQVHPSDSRDLRFWPTSPASF 165
>09_06_0083 + 20753191-20754480
Length = 429
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 617 PYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGG 727
P + V A +P LP PGG + P P GG
Sbjct: 294 PLPPVDVPALSPPLPHGKTPSGAPGGIALPPAAPAGG 330
>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 804 T*ITLINFFTVVVPSCALST*VKCCSPPSGPTGTISLPPGFN 679
T +T+ + F V+PS S V +P S P + PPGFN
Sbjct: 1074 TEVTIPSAFYSVLPSVVSSDGVSKKNPVSRPGRHVGPPPGFN 1115
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 781 LYSCCSILCFINLSQMLFTTLRPYRNY 701
L+ C + CFI L F TLR Y Y
Sbjct: 832 LFLICGVACFIALLIFFFRTLRQYFRY 858
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 638 GAAAPTLPQALIDQLKPGG-RLIVPVGPEGGEQ 733
GAA+P LP D L+PGG R + G G+Q
Sbjct: 314 GAASPRLPGCRRDALRPGGWRGVARWGAAAGQQ 346
>01_06_0964 + 33446750-33447868
Length = 372
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 256 MLAVDRKNYCPSSPYQDSPQSIGFSATISAPHMH 357
+L+ N C SSP S Q+I A +++PH H
Sbjct: 44 LLSPTATNLCASSPDPASCQAIVADAVLASPHSH 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,305,480
Number of Sequences: 37544
Number of extensions: 536553
Number of successful extensions: 1357
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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