Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_D01
         (1361 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0E3T6 Cluster: Chromosome undetermined scaffold_77, wh...    35   4.3  
UniRef50_UPI0000E4896A Cluster: PREDICTED: similar to CG33556-PA...    34   7.5  
UniRef50_UPI0000499326 Cluster: actin binding protein; n=1; Enta...    34   7.5  

>UniRef50_A0E3T6 Cluster: Chromosome undetermined scaffold_77, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_77, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1215

 Score = 35.1 bits (77), Expect = 4.3
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = +2

Query: 1133 PRXSXSXPGXPPPXXPCPGATXXIFPPXXPRLGGXXPSSXPXNXXQ 1270
            P  S +    PPP  P P  T    PP  PR+GG  P   P    Q
Sbjct: 680  PPPSRNGAPPPPPPPPPPSKTGAPPPPPPPRIGGAPPPPPPLGNNQ 725


>UniRef50_UPI0000E4896A Cluster: PREDICTED: similar to CG33556-PA;
            n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
            similar to CG33556-PA - Strongylocentrotus purpuratus
          Length = 1472

 Score = 34.3 bits (75), Expect = 7.5
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +2

Query: 1133 PRXSXSXPGXPPPXXPCPGATXXIFPPXXPRLGGXXPSSXP 1255
            P      P  PPP  P PG +    PP  P +GG  P   P
Sbjct: 431  PGVGAPPPPPPPPPPPLPGGSCIPPPPPPPGMGGAPPPPPP 471


>UniRef50_UPI0000499326 Cluster: actin binding protein; n=1; Entamoeba
            histolytica HM-1:IMSS|Rep: actin binding protein -
            Entamoeba histolytica HM-1:IMSS
          Length = 986

 Score = 34.3 bits (75), Expect = 7.5
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 1133 PRXSXSXPGXPPPXXPCPGATXXIFPPXXPRLGGXXPSSXP 1255
            P  +   PG PPP    PGAT    PP  P + G  P   P
Sbjct: 506  PPGTQPIPGVPPPPPGVPGATGVPPPPPPPGMPGAPPPPPP 546


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,818,230
Number of Sequences: 1657284
Number of extensions: 3820233
Number of successful extensions: 11728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10829
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 141727865650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)