Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C24
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    37   0.003
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.8  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   2.8  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.4  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   6.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   8.5  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   8.5  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 663 NAALKDMVAALKWVQRNIASFGGDPDNVTIFGESAGAASVSFLVL 797
           N    D    L+W  ++I SFGG+ +N+ + G SAG+ S  F ++
Sbjct: 164 NFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAGSYSALFQLI 208


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 487 SRVGIKWSIYVQVQTIPSSYSQVGRKLLVASDFLVNCIIDTIP 359
           +RVG +W+++   +    SY+ +  K  +   F  +C++D  P
Sbjct: 659 ARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENP 701


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 254 LIKNAMQ*LYRGSLRVPHVFFFLR 325
           L+K A   L+R S+ V HVF FLR
Sbjct: 60  LMKKATDNLFRKSISVAHVFAFLR 83


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 657 PGNAALKDMVAALKWVQRNIASFGGDPDNVTIFGESAGAA 776
           P + A++ +   + W+  N   +  DP+ +   GE  GA+
Sbjct: 232 PLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTGAS 271


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 600  LSTTDLIY-KGFLCLGIKGAPG-NAALKDMVAAL-KWVQRNIASFGGDPDNVTIFGESAG 770
            LS   L+Y   FL +GI      N  L+  ++ +  W+   +AS  G       FG+ AG
Sbjct: 1991 LSLPFLLYCASFLLIGISSFINENMYLRLWISHIASWIYA-VASASGSLYFSLNFGDEAG 2049

Query: 771  AASVSFLVLSPMAKGCSQ 824
            A  VS++V + + +G  Q
Sbjct: 2050 AGVVSWIVRACIVQGFQQ 2067


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 118 GEMGRLFMCMRQCDVTPHAYSTKH 47
           G +GRLFM ++ C+   H Y+  H
Sbjct: 348 GFLGRLFMDLQDCEKFHHDYTEYH 371


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 705 QRNIASFGGDPDNVTIFGESAGAASVSFLVLSPMAKGCSQKLS 833
           QRN    G  P ++T    +  AA  S  V   MAK  SQ ++
Sbjct: 188 QRNDEQLGNSPASITSKPATTSAAQPSSKVEENMAKATSQPIT 230


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -2

Query: 756 RISLRYQDPRRSWLYFSAPISKQPPYLSKLHCLVPL*FPNKEIP 625
           +++    DP   W++F        P+    HCL     PN  +P
Sbjct: 126 KVTCTVTDPTIDWVFFGMSDGSVVPWDVTRHCLGKFKVPNLYVP 169


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 129 LGYECEGDS*CFAFVNVYKYSVVLFYCCFNIKLLLSIYN 245
           L ++C+ D  C++ + V++ S  L      +  +LS+ N
Sbjct: 78  LQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCN 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,601,257
Number of Sequences: 5004
Number of extensions: 75324
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)