Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C24
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886...    39   0.006
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419...    38   0.015
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284...    34   0.18 
12_02_0856 + 23708234-23708420,23709364-23709567,23709689-237099...    29   5.1  
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801...    29   5.1  
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597...    29   6.7  

>01_06_0036 +
           25786530-25786756,25788000-25788076,25788538-25788625,
           25788706-25788786,25788866-25788940,25789048-25789149,
           25789589-25789726,25791559-25791585,25791696-25791786,
           25792423-25792584
          Length = 355

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +3

Query: 636 CLGIKGAPGNAALKDMVA----ALKWVQRNIASFGGDPDNVTIFGESAGAASVSFLVLSP 803
           C+  +  P    + DMV+     + +V  NIAS+GGDP+ + + G+SAGA   +  ++  
Sbjct: 179 CIDYRNFP-QGTIGDMVSDASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIAACALIEQ 237

Query: 804 MAKGCS-QKLSHRV 842
             K  S Q +S  V
Sbjct: 238 AVKESSGQSISWSV 251


>06_03_1338 -
           29440373-29440534,29440993-29441083,29441799-29441942,
           29442094-29442159,29442589-29442729,29443077-29443178,
           29443264-29443338,29443469-29443549,29443670-29443739,
           29444063-29444139,29444392-29444660
          Length = 425

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +3

Query: 672 LKDMVAALKWVQRNIASFGGDPDNVTIFGESAGA 773
           ++D    + +V  NIAS+GGDP+ + + G+SAGA
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGA 235


>05_07_0228 -
           28526885-28527046,28527151-28527241,28528315-28528455,
           28528560-28528625,28529180-28529317,28529759-28529860,
           28530156-28530236,28530314-28530383,28530598-28530674,
           28531035-28531483
          Length = 458

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 672 LKDMVAALKWVQRNIASFGGDPDNVTIFGESAGAASVSFLVLSPMAK 812
           + D    + +V   + ++GGDP+ + + G+SAGA   +  +L   AK
Sbjct: 237 VSDASDGISFVCETVGAYGGDPNQIYLMGQSAGAHIAACALLEQAAK 283


>12_02_0856 +
           23708234-23708420,23709364-23709567,23709689-23709918,
           23710174-23710174,23710268-23710788
          Length = 380

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 603 STTDLIYKGFLCLGIKGAPGNAALKDMVAALKWVQRNIASFGGDPDNVTIFGE 761
           S   ++ +  L L I+G+P    L + +  ++W  R  A F G  D V   G+
Sbjct: 307 SVVAVVRRSHLDLCIEGSPAGIGLGEKLPRVRWEHRFGAGFHGIEDEVVKLGD 359


>04_04_1639 +
           34978498-34978585,34979049-34979343,34980070-34980107,
           34980655-34980788,34980868-34980973,34981451-34981536,
           34981962-34982150,34982477-34982641,34982898-34982921,
           34983235-34983348,34983605-34983850
          Length = 494

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 768 GAASVSFLVLSPMAKGCSQK 827
           GA SV  L+LSP+A+ CS+K
Sbjct: 325 GATSVQSLLLSPLAEACSRK 344


>03_04_0169 -
           17959262-17959304,17959441-17959532,17959682-17959759,
           17959938-17960075,17960174-17960302,17960556-17960685,
           17960797-17960974,17961177-17961315,17961399-17961488,
           17961633-17961794,17961966-17962130,17962250-17962387,
           17962827-17963006,17963405-17963533,17963878-17964113,
           17964233-17964395,17965260-17965628,17965724-17965828
          Length = 887

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 678 DMVAALKWVQRNIASFGGDPDNVTIFGESAGAA 776
           +++AAL WV+ N+ +  GDP    +    +GAA
Sbjct: 80  EILAALTWVEGNMGAVLGDPRRPLLLSVRSGAA 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,176,636
Number of Sequences: 37544
Number of extensions: 484622
Number of successful extensions: 1198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)