Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C21
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 72 9e-14
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc... 45 4e-07
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 28 2.0
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 6.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 6.1
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 26 6.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 6.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 8.1
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.1
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 72.1 bits (169), Expect = 9e-14
Identities = 45/148 (30%), Positives = 69/148 (46%)
Frame = +2
Query: 215 FGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWD 394
FG R L E+VF+ N+WD+VEWD++ A++ + T++ + +++WD
Sbjct: 27 FGGRLLTEEEDVFEQNAWDHVEWDDEHLALAKKCIEEQKLYPVTEK--DAYMTHPERYWD 84
Query: 395 AFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFSETANHGNKQNTTLSSTNDTIRNI 574
FY ++ +FF +R W+ EFPEL + + E A ++I
Sbjct: 85 QFYGKNEGKFFMNRRWIAQEFPEL--------LDLLKEDAGE---------------KSI 121
Query: 575 FEIGCGVGNTISQYCNTVKIQNYLYMAV 658
EIGCG GNTI K N AV
Sbjct: 122 LEIGCGAGNTIWPILKENKNSNLKIFAV 149
Score = 32.3 bits (70), Expect = 0.093
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 607 FPILQYSQDPKLFVYGCDFSSKAIDIXXQNEL 702
+PIL+ +++ L ++ D+S KAID+ QN L
Sbjct: 133 WPILKENKNSNLKIFAVDYSEKAIDVVKQNPL 164
>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 45.2 bits (102), Expect(2) = 4e-07
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 344 TDEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEF 457
+D ++ ++++ K WD FY ++ RFFKDRHWL EF
Sbjct: 8 SDFWVEKYKKESKKSWDKFYKRNETRFFKDRHWLDREF 45
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 607 FPILQYSQDPKLFVYGCDFSSKAID 681
+P+L+ P L +Y CDFS +AID
Sbjct: 71 YPLLEVQ--PNLKIYCCDFSPRAID 93
Score = 24.6 bits (51), Expect(2) = 4e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 572 IFEIGCGVGNTI 607
I E+GCGVGN +
Sbjct: 59 ILEVGCGVGNLV 70
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = +2
Query: 311 EKVRNNSQV--TFTDEHLKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTS 484
EK+ N ++V + +E SL++ A + A + + D FT P
Sbjct: 196 EKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPKKVLLDIEQTFTARPARGGRPNR 255
Query: 485 APVRVFSETANHGNKQNTTLSSTN 556
AP R SETA+ + TLS T+
Sbjct: 256 APRRGPSETASKTQQAPPTLSETD 279
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 245 LQHFPDIYSQIEVFYQNYHPLI 180
+Q + DIY ++ + NY PLI
Sbjct: 434 VQEYEDIYESVKTQFSNYGPLI 455
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 356 LKSLEEDADKHWDAFYDIHQNRFFKDRH 439
L++LEEDA + D+ YD + F D H
Sbjct: 79 LRTLEEDAFSYTDSVYDFEERSF--DEH 104
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 278 EWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWDAFYDIHQNRFFKDR 436
+W EDQ K+ QE R+ S + +++ + D ++ F D K R
Sbjct: 111 KWKEDQMKRIQE--RDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAKSR 161
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 564 IVSLVELRVVFCLFPWFAVSENTRTGADVLSGANSGNSVKS 442
+VSL+ LR FC PW S + + N N+ KS
Sbjct: 550 LVSLLRLRQ-FCCHPWLVKSSSLDNSFRIRDSENVRNACKS 589
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 371 EDADKHW-DAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRVFSETANHGNKQ--NTT 541
E D W AF RF + F EF + T+ V + N+G K N+T
Sbjct: 755 EGRDSEWLGAFAQNFYRRFLSLLGYQFREFAAI----TALSVL---DACNNGTKYVVNST 807
Query: 542 LSSTNDTIRNIFE 580
TN+ I N+FE
Sbjct: 808 SKLTNEEINNVFE 820
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 242 EEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWDAF 400
+EV DNV + DQ K + R+N++ + +HLK + + ++ F
Sbjct: 61 KEVSSSEVSDNVGMEVDQPKVSTSGPRDNNRNKWAKKHLKKGKRAKNSNFSKF 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,720
Number of Sequences: 5004
Number of extensions: 66737
Number of successful extensions: 257
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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