Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C21
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 34 0.13
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236... 31 1.5
01_01_1189 + 9454042-9455655 31 1.6
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 30 2.8
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 29 3.7
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 29 4.9
10_06_0151 + 11276554-11276916,11277020-11277403 29 6.5
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 29 6.5
07_03_0605 + 19908541-19909605,19909703-19910092 28 8.5
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 8.5
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 389 WDAFYDIHQ-NRFFKDRHWLFTEFPELAPDNTSAPV 493
W +F+ H +FFK+R +L EFPEL SA V
Sbjct: 60 WTSFHRRHTCGKFFKERRYLLKEFPELLNSKDSAKV 95
>03_01_0302 -
2361948-2362649,2363422-2363617,2363873-2363997,
2364118-2364180,2364445-2364495,2364597-2364668,
2364779-2364886,2365031-2365135,2365505-2365555,
2365971-2365995,2366234-2366258,2366352-2366439
Length = 536
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 607 FPILQYSQDPKLFVYGCDFSSKAIDIXXQNE 699
FP++ S P +FV+ CDFS +A+D+ +++
Sbjct: 73 FPLI--STYPDIFVHACDFSPRAVDLVKKHK 101
Score = 27.1 bits (57), Expect(2) = 1.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 575 FEIGCGVGNTISQYCNT 625
FE+GCG GNTI +T
Sbjct: 62 FEVGCGAGNTIFPLIST 78
Score = 22.2 bits (45), Expect(2) = 1.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 419 RFFKDRHWLFTEF 457
+FFKDRH+L E+
Sbjct: 46 QFFKDRHYLDKEW 58
>01_01_1189 + 9454042-9455655
Length = 537
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 194 NSDKRPQFGNRYLENAEEVFKHNSWDNVE--WDEDQEKKAQEKVRNNSQVTFTDEHLKSL 367
+S K +F +A+E + SW+ +E DED++KK + S+ + S+
Sbjct: 468 DSSKESEFSAASPPSAQE--EDLSWEEIEDVGDEDEKKKPIPRSSPPSKAEDIRKRFSSV 525
Query: 368 EEDADKHWD 394
E+D + WD
Sbjct: 526 EDDEELSWD 534
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.9 bits (64), Expect = 2.8
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Frame = +2
Query: 233 ENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWDAFYDIH 412
EN+++ KH + D +E + +K Q K++N VT K +E K D+F++++
Sbjct: 1024 ENSDDYDKHGNGDEIEEGTNPQKYQQRKLQN---VTRKSSSKKRKDE---KRTDSFHELY 1077
Query: 413 QNRFFKDRHWLFTEFPELAPDNTSA-----PVRVFSETANHGNKQNTTLSSTNDTI 565
D +WL + A S PV+V S G ++++ S +D +
Sbjct: 1078 DEDNGVD-YWLNMGSGDDATLGNSRQQSPDPVKVKSGGKLQGKRKSSKYKSNDDLL 1132
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 209 PQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDAD 382
P++ ++ E E KH + +DE EKK E+ NS++ +D+ E++AD
Sbjct: 354 PEYAKKFAE--ETWAKHKDAEKAAFDE-AEKKRLEEESANSKIDDSDDDASDDEDEAD 408
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 269 DNVEWDEDQEKKAQEKVRNNSQVTFTDEHLKSLEEDADKHWDAFY 403
D EW++ + ++ +EKV + + + LK L+E W F+
Sbjct: 14 DEEEWEDGESEEDEEKVGSRKKAKVHAKQLKRLQEKDWGFWYVFF 58
>10_06_0151 + 11276554-11276916,11277020-11277403
Length = 248
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 389 WDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRV 499
WDAF + +N F D H LF E L P V
Sbjct: 179 WDAFTTLARNYFLVDDHPLFPEIRRLISQAEVTPAEV 215
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 356 LKSLEEDADKHWDAFYDIHQNRFFKDRHWLFTEFPELAPDNTS 484
L+S++ AD H + YD H N D WL T+ PD S
Sbjct: 520 LQSIKGAADLHTSSIYDHHVNSADGDVSWLKTDKFGSRPDEGS 562
>07_03_0605 + 19908541-19909605,19909703-19910092
Length = 484
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 389 WDAFYDIHQNRFFKDRHWLFTEFPELAPDNTSAPVRV 499
WDAF + N F D H LF E L + P V
Sbjct: 410 WDAFKTLAHNYFLVDDHPLFPEIRALLAGVEATPAEV 446
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 188 DDNSDKRPQFGNRYLENAEEVFKHNSWDNVEWDEDQEKKAQEK---VRNNSQVTFTDEHL 358
+D ++K ++ N Y + V+ +W+ V +ED E A++ RN + + D L
Sbjct: 607 NDQNNKENEYRNFYFFHRISVYFLKNWEGVGKEEDYENCARQTFTFARNKKPLHYYD--L 664
Query: 359 KSLEEDADKHWDAF-YDIHQNRF 424
D HW F DI + F
Sbjct: 665 LIFPCLYDNHWFVFTVDIKGHHF 687
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,376,080
Number of Sequences: 37544
Number of extensions: 364581
Number of successful extensions: 1013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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