Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C17
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    32   0.097
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.39 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.8  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   8.4  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 519  PPPPPPXX*KKKNPPXXFPXXXXPKXXPP 433
            PPPPPP    K  PP   P    P   PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 520 PPPPPPXXXKKKKPPPXXPXXF 455
           PPPPPP      +PPP  P  +
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGY 32



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 565 PLXPGGGGGXXTQXXPPPPPPXXXKKKK 482
           P  P   G       PPPPPP   KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 520 PPPPPPXXXKKKKPPPXXP 464
           PPPPPP   +    PP  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 565 PLXPGGGGGXXTQXXPPPPPPXXXKKKKPPP 473
           P  P  G    +Q  PPPPP    K+K   P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 20/58 (34%), Positives = 21/58 (36%)
 Frame = -1

Query: 637 LXPPXPPWXGVIXXRNSXXAQXXKPLXPGGGGGXXTQXXPPPPPPXXXKKKKPPPXXP 464
           L  P PP   VI    +       P  P  GG       PPPPPP       PPP  P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGG-----PPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 520 PPPPPPXXXKKKKPP 476
           PPPPPP    + KPP
Sbjct: 312 PPPPPPSRRNRGKPP 326



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = -2

Query: 579 PKXXNPFXPGVGXVXXXKXXPPPPPPXX*KKKNPPXXFPXXXXPKXXPP 433
           P   N   P +G        PPPPPP    + N     P     +  PP
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPP---PRSNAAGSIPLPPQGRSAPP 362



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 520 PPPPPPXXXKKKKPPP 473
           PPPPPP   + +  PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 556 PGGGGGXXTQXXPPPPPP 503
           P G G   +   PPPPPP
Sbjct: 326 PIGNGSSNSSLPPPPPPP 343


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -1

Query: 643 NPLXPPXPPWXGVIXXRNSXXAQXXKPLXPGGGGGXXTQXXPPPPPPXXXKKKKPP 476
           +PL  P PP    +  +++  +Q   P+         +Q   PPPP    +  +PP
Sbjct: 233 DPLPAPPPPPPPTLPPQSTNTSQL--PMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 58  CARLLLNTKQRSMTRKEIRKKSLFPPSS 141
           C RL +N K R +    + KKS   P+S
Sbjct: 181 CVRLKINDKTRKVDASALEKKSCLLPNS 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,618
Number of Sequences: 5004
Number of extensions: 29638
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)