Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C16
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    74   3e-14
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.87 
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   2.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.5  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   3.5  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   8.1  

>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
 Frame = +1

Query: 223 GTKGIKIAELFTKTIAATKGFDQNL-RKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGF 399
           GTK +       +    T GFD ++   +++ S   G +    ++   HLN+ G LHGG 
Sbjct: 7   GTKVLSFVRSVWQDFVNTNGFDAHVVSDIQIISAVPGFVECSLKLQKHHLNRMGNLHGGC 66

Query: 400 IAHLVDAISTYALTTNENVDTRGVSIDLSLSF-YSAAKEGDNIEVEAKTRKTGKKIAFLE 576
           IA L D   + AL  +  +   GVSID++ +F  S    G +I + AK  + G  IAF  
Sbjct: 67  IAALTDLGGSLAL-ASRGLFISGVSIDMNQTFLQSGGTLGSSILLHAKCDRLGSNIAFTS 125

Query: 577 VEVRNKDKNQVLASGRHTKYI 639
           V+      N+V A GRHTK++
Sbjct: 126 VDFLT-SSNEVFAKGRHTKFV 145


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 310 VTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSL 489
           +   G GS+V  F    +    +  +HGGFI  ++D    + +  N      GV++ L  
Sbjct: 53  IEKSGKGSVVY-FHPTSDLCGYKNIVHGGFITTMLDEALAFGVFPN-FPSKMGVTVQLDT 110

Query: 490 SFYSAAKEGDNIEVEAKTRKT-GKK 561
           ++ + A      ++  KT K  G+K
Sbjct: 111 TYVAPALCSHLYKIVTKTTKVEGRK 135


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 454 VDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 561
           +  +G+    S    SA   GD++EVE +  K  K+
Sbjct: 268 ISKQGIKFKTSTKLLSAKVNGDSVEVEIENMKNNKR 303


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 80  LLTFQCFIYVSVSRFV**NESSIYSKRCNRHCIWYLL 190
           L+ F C+I+ +V  F    ++ +YSK C R  ++YLL
Sbjct: 211 LVIFICYIFFTVLSFFNVPDAIVYSKLC-RGLMFYLL 246


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 505 AKEGDNIEVEAKTRKTGKKIAFLEVE-VRNKDKNQ 606
           AKE D+IEV+ K  KT  K    +VE   +KD N+
Sbjct: 496 AKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNE 530


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 448 ENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTR--KTGKKIAFLEVEVRNKDKNQVLASG 621
           E++D    SIDL +S  +A     N+         KT +K + +  E  N+D N + ++G
Sbjct: 123 ESMDIDMPSIDLDISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTG 182

Query: 622 R 624
           R
Sbjct: 183 R 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,351
Number of Sequences: 5004
Number of extensions: 52695
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)