Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C16
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834 73 2e-13
01_06_1566 + 38283781-38283909,38283985-38284128 64 1e-10
07_03_0279 + 16211180-16211410,16211516-16211659,16212466-162125... 54 1e-07
01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866 46 5e-05
02_04_0030 + 19041107-19041334,19041413-19041733 40 0.003
12_02_0289 - 16914975-16916238,16916246-16916484 29 6.5
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 29 6.5
>04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834
Length = 153
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/117 (30%), Positives = 63/117 (53%)
Frame = +1
Query: 295 LRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVS 474
L +++ + +G ++ F V P + G L G A L D + + + + + T GVS
Sbjct: 34 LTGVRIDAAEHGRLLCSFVVTPRIASPAGYLLSGVTATLADQLGS-GVFLSSGIGTSGVS 92
Query: 475 IDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKYIGI 645
++L+LS+ A G+ IEVE K + GK + + V+ R K +++A RHTKY+ +
Sbjct: 93 LELNLSYVDVASIGEEIEVEGKLLRAGKSVGVVSVDFRKKKTGKLIAQARHTKYLAV 149
>01_06_1566 + 38283781-38283909,38283985-38284128
Length = 90
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/87 (35%), Positives = 52/87 (59%)
Frame = +1
Query: 385 LHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKI 564
+HGG +A LVD + + + T GV++++++S+ AA+ + IE+EA+ G+
Sbjct: 1 MHGGAVASLVDLVGSAVFFAGGSPKT-GVTVEITVSYLDAARANEEIEMEARVLGIGETT 59
Query: 565 AFLEVEVRNKDKNQVLASGRHTKYIGI 645
+ VEVR K +VLA GR TKY+ +
Sbjct: 60 GCVTVEVRRKGAGEVLAHGRITKYLAV 86
>07_03_0279 +
16211180-16211410,16211516-16211659,16212466-16212597,
16213478-16213591
Length = 206
Score = 54.4 bits (125), Expect = 1e-07
Identities = 35/115 (30%), Positives = 54/115 (46%)
Frame = +1
Query: 295 LRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVS 474
L V+S + + V P +N TLHGG +A + +A+ A D
Sbjct: 53 LSSAAVSSSASPRVSCTLTVSPAAVNGYNTLHGGMVAAVAEAVGM-ACARAAAGDKEMFL 111
Query: 475 IDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKYI 639
+LS ++ SAA+ +EVEA+ + G+ + VE R KD ++ S R T YI
Sbjct: 112 GELSTAYLSAARLNSEVEVEAQILRKGRSVVVTTVEFRLKDTKKLCYSSRATIYI 166
>01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866
Length = 174
Score = 45.6 bits (103), Expect = 5e-05
Identities = 29/106 (27%), Positives = 50/106 (47%)
Frame = +1
Query: 307 KVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLS 486
+V+ G +V F V + G H G +A VD + + T + V +I +
Sbjct: 51 RVSLAEPGRLVCSFCVPAAVADADGRWHAGAMAAAVDNLCAAVVYTADGVHR--FTISQA 108
Query: 487 LSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGR 624
+SF+S A G+ +E++ + K+ VEVR K +++A GR
Sbjct: 109 MSFFSPAAHGEEVEMDGRVAHRKGKLTAAVVEVRRKASGELVAIGR 154
>02_04_0030 + 19041107-19041334,19041413-19041733
Length = 182
Score = 39.9 bits (89), Expect = 0.003
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 304 LKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDL 483
++V S G + F V ++ G L G + LVD + + A + VS D+
Sbjct: 55 IRVDSVRPGLVDCSFTVPSRLTDRSGCLAAGAVVSLVDEVGSAASIADGRPVK--VSTDM 112
Query: 484 SLSFYSAA--KEGDNIEVEAKTRKTGKKIAF--LEVEVRNKDKNQVLASGRHTKY 636
S+SF S A + GD + + A R G K A+ V + N +V+A GRH+ +
Sbjct: 113 SVSFVSLAQARPGDRLRITA--RALGHKGAYSATHVLISNAATGEVVAEGRHSLF 165
>12_02_0289 - 16914975-16916238,16916246-16916484
Length = 500
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +1
Query: 451 NVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIA-------FLEVEVRNKDKNQV 609
N D R + +D + ++ D IEVE T + GKK A + + +N DK++V
Sbjct: 276 NADLRKLFLDTTDKSIIVIEDIDAIEVELTTNRKGKKAANGDDKHVVIGLSDKNHDKSKV 335
Query: 610 LASG 621
SG
Sbjct: 336 TLSG 339
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 579 NFEECNFFSGFTSFGLYFNIVSFFGC 502
NF+E FF G SF +YF SF+ C
Sbjct: 144 NFQE--FFQGMVSFPIYFPGTSFYRC 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,308,850
Number of Sequences: 37544
Number of extensions: 299409
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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