Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C15
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    29   0.87 
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    27   3.5  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   4.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.1  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 598 NKVGKYYLDQFSVYKNAN*VAMFTLELPLYFHCHLRIRLQDRQ 470
           NKV      QFSV KN   + MF   LP Y+H H+ I   D +
Sbjct: 213 NKVLTEVPKQFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 24/82 (29%), Positives = 40/82 (48%)
 Frame = -1

Query: 840 KXKGQQXSQVCPWVXNTFSXXV*LLKISGSQTKRCQI*TKQFTYREDLLNSPKNIQNLXN 661
           K K    S++  W+  T +  + L   SGS  +  ++    + Y   LL SPK  ++L  
Sbjct: 304 KNKNVYYSRLDEWLHITLNYGLALR--SGSNNQEEEVLHLLYKY---LLFSPKFPKSLLQ 358

Query: 660 YWLSSVTVLSLKNLTKSSYNLI 595
           Y    +T  S  N+T+ +YNL+
Sbjct: 359 Y---VITFFSKPNITEENYNLL 377


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 320 LHNIDRINTE--VHGVIMNIPIPFPLPE 397
           LH + ++N +  VHGV++ +P+P  L E
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNE 138


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 657 WLSSVTVLSLKNLTKSSYNLIKSGSTI*TSLAFIRTQTKSPCSLWSSHFTSTVT 496
           +LSSV  L  +  T  +YN   + S+  TS +   +   S  SL SS   ST +
Sbjct: 48  YLSSVPTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,593
Number of Sequences: 5004
Number of extensions: 65034
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)