Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C14
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 351  GPPXXPKKXIFSPXXXX-GGAXPXPKATSXGGPXXPPPXGGAP 226
            G P  PK  + +P      GA P PK  S   P  P P G  P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKP-SVAAPPVPAPSGAPP 1160



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -3

Query: 351  GPPXXPKKXIFSPXXXX-GGAXPXPKATSXGGPXXPPPXGGAP 226
            G P  PK  + +P      GA P PK  S   P  P P  G P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKP-SVAAPPVPAPSSGIP 1179



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = -3

Query: 351  GPPXXPKKXIFSP--XXXXGGAXPXPKATSXGGPXXPPPXGGAP 226
            G P  PK  + +P       G  P PK  + G P  PPP    P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAA-GVPPVPPPSEAPP 1199


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 649 PQGXPXPXXGPVXGVFXXXXPPPGKXXKXPPP 744
           P   P P   P+ G      PPPG     PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = -3

Query: 381 PXPRGXQKTXGPPXXPKKXIFSPXXXXGGAXPXPKATSXGGPXXPPPXGGAPA 223
           P P     T  P   P   +  P    GG  P P      G   PPP    PA
Sbjct: 735 PPPAVIVPTPAPAPIP---VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.155    0.566 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,134
Number of Sequences: 5004
Number of extensions: 21258
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)