Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C14
(926 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.43
09_04_0258 - 16175258-16176069,16176111-16176414 30 2.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 3.0
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 30 3.0
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 6.9
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 28 9.2
07_03_1136 + 24218601-24218734,24218769-24219906 28 9.2
06_03_1310 + 29238644-29240260 28 9.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.2
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.43
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -3
Query: 381 PXPRGXQKTXGPPXXPKKXIFSPXXXXGGAXPXPKATSX--GGPXXPPPXGGA 229
P P+G PP P K P G + P P GGP PPP GGA
Sbjct: 339 PPPKGP-----PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGA 386
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -3
Query: 381 PXPRGXQKTXGPPXXPKKXIFSPXXXXGGAXPXPKATSXGGPXXPPPXGGAP 226
P P PP P P G P P A G P PPP G +P
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAK--GPPPPPPPKGPSP 364
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 652 QGXPXPXXGPVXGVFXXXXPPPG-KXXKXPPPXXXGGAXPP 771
+G P P P G PPPG K PPP GGA P
Sbjct: 351 KGPPPPP--PPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 315 PXXXXGGAXPXPKATSXGGPXXPPPXGGA 229
P GGA P P G PPP GGA
Sbjct: 214 PARAGGGASPPPLPVRVGASTPPPPHGGA 242
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 641 PGXPKGXXPPXXGRFXGFXPXXPPPLEXXXKXLPPXXGGXPP 766
P P+G PP + P PPP + +PP G PP
Sbjct: 11 PPPPQGGFPPQPPPMNPYGP--PPPQQPAYGHMPPPQGAPPP 50
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +2
Query: 635 FXPGXPKGXXPPXXGRFXGFXPXXPPPLEXXXKXLPPXXGGXPPP 769
F PG P+ PP + P PPP PP P P
Sbjct: 72 FGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSP 116
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +1
Query: 646 GPQGXPXPXXGPVXGVFXXXXPPP--GKXXKXPPPXXXGGAXPP 771
G G P P PV G+ PPP G PPP GG PP
Sbjct: 1144 GIGGVPPPP--PVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPP 1185
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 300 GGAXPXPKATSXGGPXXPPPXGG 232
GG P P GGP PPP G
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAG 1168
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Frame = -3
Query: 381 PXPRGXQKTXGPPXXPKKXIFS-----PXXXXGGAXPXPKATSXGGPXXPPPXGGAPA 223
P P GPP P F P G A P P GG PP GAPA
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPA 1206
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -3
Query: 348 PPXXPKKXIFSPXXXXGGAXPXPKATSXGGPXXPPPXGG 232
PP P P G P P + G P PPP GG
Sbjct: 1082 PPLPPP---LPPTLGDYGVAPPPPSIGAGAPPPPPPPGG 1117
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 773 PGGXAPPXXXGGGFXXXFPGGG 708
PGG P GGGF PGGG
Sbjct: 537 PGGGFPGGMPGGGFPGGMPGGG 558
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -3
Query: 768 GGGXPPXXGGRXFXXFSRGGGXXGKNPXNRPXXGGWXPLGXPG 640
GGG P G F GGG G P P GG P G PG
Sbjct: 538 GGGFPGGMPGGGFPGGMPGGGFPGGMPGGFP--GGAMPGGVPG 578
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 709 PPPGKXXKXPPPXXXGGAXPP 771
PPPG PPP G A PP
Sbjct: 448 PPPGSSMYNPPPPAPGQATPP 468
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -3
Query: 381 PXPRGXQKTX--GPPXXPKKXIFSPXXXXGGAXPXPKATSXGGPXXPPPXGGAP 226
P P G +T GPP ++ F G P P PPP G P
Sbjct: 216 PAPTGGLRTPYGGPPAPSQQVPFGGAPQWPGTQPPPFGAQAAPSSQPPPFMGVP 269
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = -1
Query: 770 GGXAPPXXXGGGFXXXFP--GGGXXXXKTPQTGPXXGXGXP 654
GG PP GGG P GG + P G G G P
Sbjct: 104 GGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAP 144
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = -3
Query: 351 GPPXXPKKXIFSPXXXXGGAXPXPKATSXGGPXXPPPXGG 232
G P P +SP GG P P PPP G
Sbjct: 475 GTPSSPPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSG 514
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.2
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Frame = -3
Query: 381 PXPRGXQKTXGPPXXPKKXIFSPXXXXG---GAXPXPKATSXGGPXXPPP--XGGAPAR 220
P P GPP P + G G P P A GG PPP GG AR
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRAR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.155 0.566
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,634,106
Number of Sequences: 37544
Number of extensions: 385594
Number of successful extensions: 877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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