Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_C11
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    29   0.64 
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    28   1.5  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    28   2.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.5  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    27   4.5  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.0  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   7.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.9  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   7.9  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = +3

Query: 555 CRSGAEECGRMDDCAVVMPREGC---CTKCKGCWYNGTEHASHTEWNDDGKVFRC 710
           C S  EE     DC V++    C   C  C  C YN  E+     WN+  K   C
Sbjct: 488 CHSALEE-----DC-VLLGEIRCHIGCLSCTKCKYNNRENYDWARWNNQTKQIEC 536


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 594 CAVVMPREGCCTKCKGCWYNGTEHASHTEW 683
           C    P   C  KC  CW +GT     T W
Sbjct: 348 CMEATPSLACANKCTFCWRHGTNPVG-TSW 376


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = -2

Query: 616 SRGITTAQSSIRPHSSAPLRQSTKPFLQMQRKXXXXXXXXXXXCNRTGSPSFEHGMRTPL 437
           SR + ++  SI P +  P     +P +  +++             R+ SPS ++  R+P 
Sbjct: 182 SRNLRSSSRSISPVTEQPQSPKIQPVIPEKKEKSEKKESSMTLRKRSVSPSSQNTARSPK 241

Query: 436 ITAEEASTGLLEMIPASSRRHAAYAVRHGAR 344
             A E       + PASS   +  A+R  +R
Sbjct: 242 RMATE------PIEPASSPAASNQAIRRSSR 266


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 453 PCSNEGEPVRLQDTRL--EQDWSSCFRCICKNGFVDCRSGAEECGRMDDC 596
           PC  +G+  +L    L  +Q  + C++C  KN    CR     C + + C
Sbjct: 339 PCC-DGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLCRQSTNPCDKPEFC 387


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 418 STGLLEMIPASSRRHAAYAVRHGARMFASTRGAGTRCSASLASHPRA 278
           S+G+L  + A  RRH  +    GA    +T G         ASH R+
Sbjct: 15  SSGVLNSVSAFVRRHRTFVYTIGAVAVFATVGGVYHVQQKKASHKRS 61


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 584 PPALFGSTPTVHETVLTNAAET 519
           PPA+ GSTP V+E  +  ++ T
Sbjct: 480 PPAVSGSTPPVNEAAVIESSNT 501


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 656 TIIPATFAFSAATLARHNDRAVIHPPALFGSTPT 555
           T  P+TF+F  A    ++  A    P  FGST T
Sbjct: 62  TSAPSTFSFGKAATTGNSTNASTSSPFSFGSTNT 95


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 575  LFGSTPTVHETVLTNAAETTAPI 507
            L G TP V ET+LT+   +  PI
Sbjct: 2456 LLGKTPNVLETILTSIVSSDMPI 2478


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -1

Query: 695 PIIVPLGV*RVLGTIIPATFAFSAATLARHNDRAVIHPPALFGSTPTVHETVLTNAAETT 516
           P  V + V  VL   I ++  +++ T + HN  +   P        TV  T  T    TT
Sbjct: 155 PSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTSTEATTVTTTT 214

Query: 515 A 513
           A
Sbjct: 215 A 215


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 20   IGNSLRFLTQCTRCLADARASLHGRPCAHLHAPTPTDRNDIAYTLTGIP 166
            +G+++R  T+ TR   D R +   RP A    P P   ++I  + T  P
Sbjct: 938  LGSNMRLPTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEP 986


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 588 DDCAVVMPREGCCTKCK 638
           ++C V +P EG CTKCK
Sbjct: 217 EECQV-LPIEGMCTKCK 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,563,834
Number of Sequences: 5004
Number of extensions: 75124
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)