Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C11
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0131 + 1050028-1050459,1051599-1051701,1052338-1052393,105... 31 0.89
07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509 31 1.2
04_04_0531 - 26048558-26049082 31 1.6
09_03_0198 - 13419630-13419806 30 2.7
08_01_0132 + 1055977-1056483,1058083-1058186,1058330-1058385,105... 29 3.6
05_04_0204 - 19022329-19023990 29 4.7
05_03_0032 - 7582595-7582690,7582879-7583004,7583119-7583185,758... 29 4.7
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 29 4.7
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 29 6.3
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 28 8.3
03_05_0673 - 26615651-26615898,26616410-26616479 28 8.3
>08_01_0131 +
1050028-1050459,1051599-1051701,1052338-1052393,
1052517-1052693,1052820-1052933,1053057-1053386
Length = 403
Score = 31.5 bits (68), Expect = 0.89
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 577 AGGWMTARSLCLARVAALNAKVAGIMVPSTRHTPSGTMMGKCSDAKPAS 723
AGG + L L AA A VA P H SG +MG + P+S
Sbjct: 20 AGGRRSPLELSLLLTAAAGAAVAAAATPRDAHAASGGVMGGRRSSSPSS 68
>07_03_0916 + 22565620-22566463,22566566-22566792,22566892-22567509
Length = 562
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 691 SSFHSVCDACSVPLYQQPLHLVQQPSRGITTAQSSIRPHSSAPLR 557
SSFHS+ A Y QPSRGI+T ++RP + A R
Sbjct: 51 SSFHSLALAGLADKYAAGAAGRLQPSRGISTTSPALRPAAEAAAR 95
>04_04_0531 - 26048558-26049082
Length = 174
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -2
Query: 391 ASSRRHAAYAVRHGARMFASTRGAGTRCSAS 299
A S R AA +H RMFA +RGA RC S
Sbjct: 2 AGSARSAA--AKHAYRMFAPSRGAAARCPGS 30
>09_03_0198 - 13419630-13419806
Length = 58
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 473 LALVRTRNADPFNNSGRSVYRAVGDDSGEQ*ETCGVCGAA 354
LA +R ADP +S + V +G DSG T G+ G+A
Sbjct: 5 LATPSSRGADPPPSSTKGVTTTLGSDSGSDGATLGMGGSA 44
>08_01_0132 +
1055977-1056483,1058083-1058186,1058330-1058385,
1058534-1058688,1058842-1058955,1059207-1059449
Length = 392
Score = 29.5 bits (63), Expect = 3.6
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +1
Query: 511 GAVVSAAFVRTVSWTVGVEPKSAGGWMTARSLCLARVAALNAKVAGIMVPSTRHTPSGTM 690
GA +AA+ R + PK T SL L AA V P T H SG +
Sbjct: 29 GAATAAAYPRVRGERGRLLPKQGP---TDLSLLLLGAAAA---VVAAATPRTAHAASGGV 82
Query: 691 MGKCSDAKPASSRYPGRNVTRLGDRPKXQRHTH 789
MG D P+ S Y + + P RH H
Sbjct: 83 MGG-RDTSPSPSSYSSSSSSSSSSSPSV-RHYH 113
>05_04_0204 - 19022329-19023990
Length = 553
Score = 29.1 bits (62), Expect = 4.7
Identities = 32/108 (29%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Frame = +3
Query: 66 PTPALACMADRVPIST-HRPRQIGTTSHIH*LASLKRFXFSRPKSNSMVPKFRKHSMHIY 242
P P L + R S HR R+ LA K RP+ + P R S H Y
Sbjct: 7 PLPRLLLLRRRCLSSAPHRDRRFLPLLRFAALA--KELSDHRPRPGTPPPPTRPRSPHPY 64
Query: 243 DLNLKVLRSCGVARGCDAREAEQRVPAPRVDANMR--APCRTAYAACL 380
D N + G G A A + R R A C T AA L
Sbjct: 65 DYNRLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACFTTVAAAL 112
>05_03_0032 -
7582595-7582690,7582879-7583004,7583119-7583185,
7583268-7583470
Length = 163
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 537 KNGFVDCRSGAEECG-RMDDCAVVMPREGCCTKCKGCWYNGTEHASHTEWND 689
K F +C G EE G R+ DC V + G C+G +G + + W+D
Sbjct: 95 KTEFQEC-GGVEEKGDRIQDCGKVEEKGGGIHDCEGRMSDGFDLDEYEFWSD 145
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 544 VSWTVGVEPKSAGGWMTARSLCLARV 621
+SW V VE +A GW T + C+A V
Sbjct: 50 LSWRVMVEANNARGWRTVPAACVAYV 75
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 28.7 bits (61), Expect = 6.3
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 571 KSAGGWMTARSLCLARVAALNAKVAGIMVPSTRHTPSGTMMGKCSDAKPASSRYPG 738
K AGGW SL LA V A+ V I++P T + S GK ++A+ R G
Sbjct: 193 KIAGGWGWRVSLGLAAVPAVIMTVGSILLPDTPN--SLLSRGKENEARTMLRRIRG 246
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -1
Query: 464 VRTRNADPFNNSGRSVYRAVGDDSGEQ*ETCGVCGAARCPHVRVYSRRRH-PLLRLPCIT 288
+R+R + P + A G + E+ E G GAA R RRRH P +RL
Sbjct: 48 IRSRLSSPPTDPAADAATAAGSTARERRE--GAEGAATAGSARNCRRRRHHPRIRLRPPP 105
Query: 287 PSRHATRAQHL 255
RH R + +
Sbjct: 106 TRRHCEREREM 116
>03_05_0673 - 26615651-26615898,26616410-26616479
Length = 105
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 586 WMTARSLCLARVAALNAKVAGIMVPSTRHTPSGTMMGKCSDAKPASSRYPGRNVTRLGD 762
W + +LC V + ++ +MV STR + DA AS+R GR R+GD
Sbjct: 4 WNNSATLCSGPVTLIQKSLSRVMVSSTRTVRD--LHDGTPDAAEASAR--GRTRRRVGD 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,701,379
Number of Sequences: 37544
Number of extensions: 599544
Number of successful extensions: 1971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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