Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C11
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 31 1.4
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 30 1.8
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL032626-3|CAA21540.1| 306|Caenorhabditis elegans Hypothetical ... 29 3.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
Z92831-2|CAB07368.2| 861|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 5.6
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024863-2|AAP31420.1| 366|Caenorhabditis elegans Prion-like-(q... 28 7.4
AC024863-1|AAF60877.1| 481|Caenorhabditis elegans Prion-like-(q... 28 7.4
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 9.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 9.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 9.8
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 525 RCICKNGFVDCRSGAEECGRMDDCAVVMPREGCC 626
RCICK GFV + + C D C + E C
Sbjct: 360 RCICKEGFVRMANDEDVCVPFDFCDKTVENEETC 393
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Frame = +3
Query: 570 EECGRMDDCAVVMPR-EGCCTKCK------GCWYNGTEHASHTEWN--DDGKVFRCEAGV 722
E+ G +DD V EG C K GC +NG + + EWN D V+ C+ G
Sbjct: 200 EDFGTVDDAVVKCAMVEGKCVLRKAEVTELGCRHNGKVYRHNEEWNSEDGATVYACQFGK 259
Query: 723 I 725
+
Sbjct: 260 V 260
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 528 CICKNGFV--DCRSGAEECGRMDDCA 599
CICK+GF SG+E C +D+CA
Sbjct: 2291 CICKSGFRRNSTLSGSETCADIDECA 2316
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +3
Query: 489 DTRLEQDWSSCFRCICKNGFVDCRSGAEECG---RMDDCAVVMPREGCCTKCKGC--WYN 653
D ++ SSC C + + D +SG EC D C P +KC+GC +
Sbjct: 1980 DAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRCKPDHWGFSKCQGCQGCHC 2039
Query: 654 GTEHASHTEWNDDGKVFRCEAGVITISRPEC 746
GT A +T+ N + C G + C
Sbjct: 2040 GTA-AFNTQCNVENGQCTCRPGATGMRCEHC 2069
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +3
Query: 489 DTRLEQDWSSCFRCICKNGFVDCRSGAEECG---RMDDCAVVMPREGCCTKCKGC--WYN 653
D ++ SSC C + + D +SG EC D C P +KC+GC +
Sbjct: 1980 DAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRCKPDHWGFSKCQGCQGCHC 2039
Query: 654 GTEHASHTEWNDDGKVFRCEAGVITISRPEC 746
GT A +T+ N + C G + C
Sbjct: 2040 GTA-AFNTQCNVENGQCTCRPGATGMRCEHC 2069
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 282 RGCDAREAEQRVPAP 326
RGC AR A QRVPAP
Sbjct: 191 RGCPARSAPQRVPAP 205
>AL032626-3|CAA21540.1| 306|Caenorhabditis elegans Hypothetical
protein Y37D8A.3 protein.
Length = 306
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 528 CICKNGFVDCRSGAE---ECGRMDDCAVVMP-REGCCTKCKGCWYNGTEHASHTEWNDDG 695
C +N F D E E G+ +C ++ P + K GC + G ++++ W
Sbjct: 168 CYMQNSFSDLLMSGESRIENGKRHECEIIGPGKVRYVVKMLGCMHEGQQYSTGQMWTHQH 227
Query: 696 KVFRCE 713
++C+
Sbjct: 228 VRYQCK 233
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +3
Query: 489 DTRLEQDWSSCFRCICKNGFVDCRSGAEECG---RMDDCAVVMPREGCCTKCKGC--WYN 653
D ++ SSC C + + D +SG EC D C P +KC+GC +
Sbjct: 1980 DAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRCKPDHWGFSKCQGCQGCHC 2039
Query: 654 GTEHASHTEWNDDGKVFRCEAGVITISRPEC 746
GT A +T+ N + C G + C
Sbjct: 2040 GTA-AFNTQCNVENGQCTCRPGATGMRCEHC 2069
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +3
Query: 489 DTRLEQDWSSCFRCICKNGFVDCRSGAEECG---RMDDCAVVMPREGCCTKCKGC--WYN 653
D ++ SSC C + + D +SG EC D C P +KC+GC +
Sbjct: 1980 DAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRCKPDHWGFSKCQGCQGCHC 2039
Query: 654 GTEHASHTEWNDDGKVFRCEAGVITISRPEC 746
GT A +T+ N + C G + C
Sbjct: 2040 GTA-AFNTQCNVENGQCTCRPGATGMRCEHC 2069
>Z92831-2|CAB07368.2| 861|Caenorhabditis elegans Hypothetical
protein F22G12.4 protein.
Length = 861
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Frame = -2
Query: 436 ITAEEASTGLLEMIPASSRRHAAYAVRHGAR-----------MFASTRGAGTRCSASLAS 290
+T+ + +T LLE + A + +HAA + +GA M + R C ++A
Sbjct: 608 VTSADGTTPLLEALKARNDKHAAILMENGAEPNVKDEYGENAMLCAVRSGSLDCIRAVAD 667
Query: 289 HPRATPHERNTFKFRS 242
R + RN + S
Sbjct: 668 SSRTNRYARNKIGYTS 683
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +3
Query: 501 EQDWSSCFRCICK----NGFVDCRSGAEECGRMDDCAVV 605
EQ + +CI K +G +DCR G++E G +CA+V
Sbjct: 996 EQFQCTSGKCIPKRRQCDGTLDCRDGSDEKGCKKECAIV 1034
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Frame = +3
Query: 378 LLLLAGIISNSPVDASSAVIKGVRIPCSNEGEPVRLQDTRLEQDWSSCFRCICKNG---- 545
LL L +I+ S V++ + I + + ++ +R++++ C C C G
Sbjct: 6 LLALFAVITISQVESGVLPVSTTEITLVSSETSI-IESSRVKRNGGCCGCCGCGGGGGGC 64
Query: 546 -FVDCRSGAEECGRMDDCAVVMPREGCCTKCKGC 644
CR C R C R CCT+C C
Sbjct: 65 GCCCCRPRCCCCCR-PKCCCTCCRTCCCTRCCTC 97
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 23 GNSLRFLTQ--CTRCLADARASLHGRPCAHLHAPTPTDRNDIAYTLTG 160
GN F T+ C A L P H AP PT+ IA+TL+G
Sbjct: 1982 GNLNNFATRDDCNNFCAGIGLDLSS-PYDHASAPVPTESYQIAFTLSG 2028
>AC024863-2|AAP31420.1| 366|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform b protein.
Length = 366
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 115 TDPDRSERHRIYTDWHPSNDSXFPDRSQTRWFLNFV-NIP 231
+ PD S R++I ++ + P SQ +W N+V N+P
Sbjct: 170 SSPDESVRYQITDFFYLDTNGQLPQSSQGQWSQNYVMNLP 209
>AC024863-1|AAF60877.1| 481|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform a protein.
Length = 481
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 115 TDPDRSERHRIYTDWHPSNDSXFPDRSQTRWFLNFV-NIP 231
+ PD S R++I ++ + P SQ +W N+V N+P
Sbjct: 170 SSPDESVRYQITDFFYLDTNGQLPQSSQGQWSQNYVMNLP 209
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 522 FRCICKNGFVDCRSGAEECGRMDDCAVVMPREGCCTKCKGCWYNGTEHASHTEWNDDGKV 701
+ C C GF D + GR+ C V+P T C + + A T+ DDG +
Sbjct: 1200 YSCACPPGFKDKSPSSSRPGRL--CIPVIPECDNPT-LNDC--DSPDRAVCTD-TDDGYM 1253
Query: 702 FRCEAGVITIS 734
RC G + IS
Sbjct: 1254 CRCRQGFLDIS 1264
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 522 FRCICKNGFVDCRSGAEECGRMDDCAVVMPREGCCTKCKGCWYNGTEHASHTEWNDDGKV 701
+ C C GF D + GR+ C V+P T C + + A T+ DDG +
Sbjct: 1784 YSCACPPGFKDKSPSSSRPGRL--CIPVIPECDNPT-LNDC--DSPDRAVCTD-TDDGYM 1837
Query: 702 FRCEAGVITIS 734
RC G + IS
Sbjct: 1838 CRCRQGFLDIS 1848
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 522 FRCICKNGFVDCRSGAEECGRMDDCAVVMPREGCCTKCKGCWYNGTEHASHTEWNDDGKV 701
+ C C GF D + GR+ C V+P T C + + A T+ DDG +
Sbjct: 1200 YSCACPPGFKDKSPSSSRPGRL--CIPVIPECDNPT-LNDC--DSPDRAVCTD-TDDGYM 1253
Query: 702 FRCEAGVITIS 734
RC G + IS
Sbjct: 1254 CRCRQGFLDIS 1264
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 522 FRCICKNGFVDCRSGAEECGRMDDCAVVMPREGCCTKCKGCWYNGTEHASHTEWNDDGKV 701
+ C C GF D + GR+ C V+P T C + + A T+ DDG +
Sbjct: 1784 YSCACPPGFKDKSPSSSRPGRL--CIPVIPECDNPT-LNDC--DSPDRAVCTD-TDDGYM 1837
Query: 702 FRCEAGVITIS 734
RC G + IS
Sbjct: 1838 CRCRQGFLDIS 1848
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +3
Query: 522 FRCICKNGFVDCRSGAEECGRMDDCAVVMPREGCCTKCKGCWYNGTEHASHTEWNDDGKV 701
+ C C GF D + GR+ C V+P T C + + A T+ DDG +
Sbjct: 1784 YSCACPPGFKDKSPSSSRPGRL--CIPVIPECDNPT-LNDC--DSPDRAVCTD-TDDGYM 1837
Query: 702 FRCEAGVITIS 734
RC G + IS
Sbjct: 1838 CRCRQGFLDIS 1848
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,595,379
Number of Sequences: 27780
Number of extensions: 470789
Number of successful extensions: 1541
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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