Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_C11
(857 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF487333-1|AAL93262.1| 80|Apis mellifera integrin betaPS protein. 25 0.68
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 1.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 2.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 22 6.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 8.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.3
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 8.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 8.3
>AF487333-1|AAL93262.1| 80|Apis mellifera integrin betaPS protein.
Length = 80
Score = 25.4 bits (53), Expect = 0.68
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 709 HLNTFPSSFHSVCDACSVPL-YQQPLHLVQQPSRGITTAQ-SSIRPHSSAP 563
+++T P S CD C+ P Y+ + L Q S + + +S+ + AP
Sbjct: 8 YVSTMPKSLKEPCDGCAAPYGYKNIMTLSQDTSHFASLVRNASVSGNLDAP 58
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 24.2 bits (50), Expect = 1.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 590 IHPPALFGSTPTVHETVLTNAAETTA 513
+HPPA S P T T TTA
Sbjct: 94 LHPPASSTSLPATITTTTTTTTTTTA 119
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 161 IPQTIPVFPTEVKLDGS 211
IP+ IP+ TEV LDG+
Sbjct: 788 IPRRIPMDATEVYLDGN 804
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -1
Query: 632 FSAATLARHNDRAVIHPPALFGST 561
+ + + H+ + PP +FGST
Sbjct: 87 YQTSVVVTHDGSCLYVPPGIFGST 110
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 304 ASLASHPRATPHERNTFKFRS 242
A + SHP TP ++F F+S
Sbjct: 331 AFMLSHPFGTPRIMSSFDFQS 351
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 358 AANPPSGYIRSAFGTPISTGRPATVEDTS 386
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.8 bits (44), Expect = 8.3
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = -3
Query: 249 SDRRCAWNVYEI*EPSSLTSVGKTGIV*GMPVSVYAMSFRSVGVGAWR 106
S++R A N+ PS ++ + G++ +P+S ++ +G W+
Sbjct: 339 SNKRTAGNLATREHPSRNFTMSEDGMIEVIPLSAIPEPSKNPAMGHWQ 386
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 426 AANPPSGYIRSAFGTPISTGRPATVEDTS 454
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 57 AASPTPALACMADRVPISTHRPRQIGTTS 143
AA+P A PIST RP + TS
Sbjct: 426 AANPPSGYIRSAFGTPISTGRPATVEDTS 454
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 488 RHETRTRLEQLFPLHL*ERFRGLSEWSRRVRADG*LRGRYASRGL 622
+H+ R + + H +++RG E + +RA + R S GL
Sbjct: 849 KHQIRKQKKMELARHAADKWRGAIEKRKTLRASIAAQRRIQSNGL 893
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 619 VAALNAKVAGIMVPSTRHTPSGTMMGK 699
V+ ++ +AG++ P TPS MM K
Sbjct: 833 VSYMSTTMAGVIYPPVIGTPSTGMMYK 859
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,870
Number of Sequences: 438
Number of extensions: 5391
Number of successful extensions: 21
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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